Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cca05g00248 ATGGAGTTCATGGTTCGGTGTTGTAGTTCGTGCGCGCTGTCCAGATTCCGTTGCAACTATCGATTCGCCGTCGTTGTTTTCGAGATTGTATTGATATTGGCATGGTTGGAAATCAATAACGCAAAGCCCCAAGAACATCAATTTCAACGGGGAGGCTTGGAAGGGAGGATTGAGAACATTGCTTCACACTCCTGTATACATGACCAGATACTTGAACAGAGAAAGCAACCTGGTCGCAAGGTGTATTCAGTTACCCCGCAGGTTTACAAGCCTGGTCTCTTGAAACCCCTCCAGCATAAAGGCAGGGCTTTACTTGGTGTATCAACGTCATCGGAGCCTCAAGGGAACAAAAAGCAACCTATTAGGATATATCTAAATTATGATGCTGTTGGTCACTCCCCTGACAGGGATTGTCAAAAAATTGGTGATATTGTCAAGCTAGGGGAGCCACCCATTACTTCTCTTCCTGGTTTGCCTTCTTGTAATCCTCTTGCTGATCCTCCTGTCTTTGGTGATTGTTGGTATAACTGCACTTCTGAAGATATCTCAGGAGAGGACAAAAAACATCGCCTTCGTAAGGCATTAGGTCAGACAGCTGACTGGTTTTGGAGAGCCTTGTCTGTTGAGCCTGTCAAGGGGAACTTGCGATTAAGTGGATACTCTGCATGTGGACAAGATGGAGGTGTGCCACTTCCTCATGAATATGTTGAAGAGGGAGTCTCTGATGCTGACTTAGTTCTCTTGGTGACTACAAGACCTACAACTGGGAATACACTTGCTTGGGCTGTGGCATGTGAACGGGACCAATGGGGCCGTGCTATAGCTGGACATGTTAATGTTGCTCCTCGTCATTTGACAGCTGAGGCCGAAACTTTGCTTTCAGCTACTCTAATACATGAGGTTATGCATGTTCTTGGCTTTGATCCTCATGCCTTTGCTCATTTTAGAGATGAAAGGAAAAGACGCCGTAGTAAGGTTACTGAACAAGTTATGGATGAAAAGATTGGGCGGATGGTAACACGTGTGGTGCTTCCACGTGTAGTCATGCATTCTCGGCACCATTACGCGTCGTTCTCAGGAAATTTTACTGGTTTAGAGCTGGAAGATGGTGGTGGGCGTGGCACATCAGGTGGACAATCCTCATTGGCTGATTATTGCACTTATTTTGTTGCATACTCTGATGGATCTTGTACAGACACTAGCAGTGCACGGGCACCAGATAGAATGCTAGGTGAAGTTCGGGGAAGTAACTCTAGGTGTATGGCCTCATCATTAGTGCGCACAGGATTTGTGCGAGGTTCTCTGACCCAGGGAAATGGTTGTTATCAGCATAGGTGTATCAACAATTCTTTAGAGGTTGCTGTGGATGGTAGCTGGAAAGTGTGTCCTCGGGCTGGTGGACCCATTCAGTTCCCTGGCTTTAATGGTGAATTAATCTGTCCTGCATATCATGAGCTCTGTAACACAGATCCAGTTATCGTGTCTGGGAAATGTCCCAGTGCATGTAATTTCAATGGAGATTGTGTTGATGGAAGGTGCCACTGTTTTCTTGGATTTCATGGTCGTGATTGCAGTAGACGTTCTTGCCCCAGCAATTGTACTGGCAATGGCATATGCCTCTCTGGTGGAATATGTGAATGTAAAACTGGCTATACTGGCATTGACTGTTCCACTGCTGTTTGTGATGAGCAATGCAGCCTTCACGGCGGGGTTTGTGATAATGGAGTTTGTGAATTCCGCTGTTCTGACTATGCTGGATACATTTGCCAGAACAGCTCCATTCTCCTCTCCAGTCTTTCGGTTTGCAGAAATGTGCTGGGAAATGATATTTCTGGGCAGCATTGTGCACCCAGTGAACCTAGCATACTACAGCAGCTAGAAGAAGTGGTTGTCATGCCCAATTACCATCGATTATTTCCTGGTGGTGCTAGGAAATTATTTAATATATTTGGCAGCACCTACTGTGATGAGGCAGCTAAAAGGCTTGCCTGCTGGATCTCAATCCAGAAGTGTGATAGGGATGGAGACAACAGGCTAAGAGTATGTCATTCTGCATGTGAGGCTTATAATCTGGCATGCGGAGCTTCACTGGACTGCGGTGACCAAACCCTTTTCAGCAGCGAGGGGGATGGGGAGGCTCAGTGCACCGGCTCTGGTGAGATTAAAATGTCGTGGTTTAATCGACTAAGAAGTAGTTTTTCTTTGAGAAATAGTTCCTCCAAAGGAATATCTGTAAGATATAGGCAGCTTTAG 2253 0.4603 MEFMVRCCSSCALSRFRCNYRFAVVVFEIVLILAWLEINNAKPQEHQFQRGGLEGRIENIASHSCIHDQILEQRKQPGRKVYSVTPQVYKPGLLKPLQHKGRALLGVSTSSEPQGNKKQPIRIYLNYDAVGHSPDRDCQKIGDIVKLGEPPITSLPGLPSCNPLADPPVFGDCWYNCTSEDISGEDKKHRLRKALGQTADWFWRALSVEPVKGNLRLSGYSACGQDGGVPLPHEYVEEGVSDADLVLLVTTRPTTGNTLAWAVACERDQWGRAIAGHVNVAPRHLTAEAETLLSATLIHEVMHVLGFDPHAFAHFRDERKRRRSKVTEQVMDEKIGRMVTRVVLPRVVMHSRHHYASFSGNFTGLELEDGGGRGTSGGQSSLADYCTYFVAYSDGSCTDTSSARAPDRMLGEVRGSNSRCMASSLVRTGFVRGSLTQGNGCYQHRCINNSLEVAVDGSWKVCPRAGGPIQFPGFNGELICPAYHELCNTDPVIVSGKCPSACNFNGDCVDGRCHCFLGFHGRDCSRRSCPSNCTGNGICLSGGICECKTGYTGIDCSTAVCDEQCSLHGGVCDNGVCEFRCSDYAGYICQNSSILLSSLSVCRNVLGNDISGQHCAPSEPSILQQLEEVVVMPNYHRLFPGGARKLFNIFGSTYCDEAAKRLACWISIQKCDRDGDNRLRVCHSACEAYNLACGASLDCGDQTLFSSEGDGEAQCTGSGEIKMSWFNRLRSSFSLRNSSSKGISVRYRQL 750
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cca05g00248 750 PANTHER METALLOENDOPEPTIDASE/ZINC ION-BINDING PROTEIN 3 377 - -
Cca05g00248 750 SUPERFAMILY Metalloproteases ("zincins"), catalytic domain 115 491 - -
Cca05g00248 750 Gene3D Leishmanolysin domain 4 392 487 - -
Cca05g00248 750 SMART egf_5 497 525 IPR000742 -
Cca05g00248 750 SMART egf_5 528 557 IPR000742 -
Cca05g00248 750 Pfam Leishmanolysin 175 376 IPR001577 GO:0004222|GO:0006508|GO:0007155|GO:0016020
Cca05g00248 750 ProSiteProfiles EGF-like domain profile. 525 557 IPR000742 -
Cca05g00248 750 Gene3D Laminin 497 526 - -
Cca05g00248 750 Gene3D Laminin 528 559 - -
Cca05g00248 750 PANTHER LEISHMANOLYSIN-LIKE PEPTIDASE 377 722 IPR001577 GO:0004222|GO:0006508|GO:0007155|GO:0016020
Cca05g00248 750 PANTHER LEISHMANOLYSIN-LIKE PEPTIDASE 3 377 IPR001577 GO:0004222|GO:0006508|GO:0007155|GO:0016020
Cca05g00248 750 PANTHER METALLOENDOPEPTIDASE/ZINC ION-BINDING PROTEIN 377 722 - -
Cca05g00248 750 ProSitePatterns EGF-like domain signature 1. 545 556 IPR000742 -
Cca05g00248 750 Pfam EGF-like domain 529 556 IPR013111 -
Cca05g00248 750 Gene3D - 115 304 - -
Cca05g00248 750 ProSitePatterns EGF-like domain signature 2. 545 556 IPR000742 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Cca05g00248 Cca-Chr5 5275123 5283084 Dispersed/Wgd
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Cca05g00248 05 5275123 5283084 Cca05g00248 05 5275123 5283084 ECH
Cca05g00248 05 5275123 5283084 Cca07g00383 07 5017890 5026170 PCT