Gene search
Sequence information
| Select | Gene | Cds | Cds_length | GC_content | Pep | Pep_length |
|---|---|---|---|---|---|---|
| Cca05g00247 | ATGGCCCTAAACCCAAACTCAAAAACCTCTATACTCTTCCACATGCTCCTCTTTATATTAGGAGGTAACGTAGCATCTGCCGCAGTGTTTATCCTCGAAAACCATTGCACTCAAACAGTTTGGCCGGGGATATCCGGCAACGGCGCCGCCACTCTCGGCGGGGGCGGGNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNGCGGCGGCGGTTTCACCCTGCAGCCCGGTTCGGCGGTTAACCTCACCGCACCGTCGGGCTGGTCAGGCCGCATCTGGGCCCGGACCGGGTGCAGCTTCGACGGCTCCGGCAACGGGAAATGCGTCACGGGAGACTGCGCCGGAGGACTAAAATGCACCGGGTCAGGCGTCCCGCCGGCGACGCTGGCGGAGTTTACCATCGGAAACGACGGTTTTGACCTTTACGACGTGAGTCTAGTGGACGGTTACAACGTGGGGATGAGTGTGCAGGCTACCGAAGGGTGCGGGGCCACGGGGTGCGCGGCGGACCTGAACGCCGCGTGTCCGGCGGAGCTGCAGGTGAGGGACGGCGGCGGCGCGGTGGTGGCGTGCAAGAGCGCGTGCACGGCGTTCAACACGGCCGAGTATTGCTGCACCGGCGATTACTCGTCGCCGGGCACGTGTCCGCCGACGCGTTACTCGGATTTTTTCAAAAGCGCTTGTCCCTTGGCTTATAGTTACGCTTTCGATGAGGATGGTTTCGACCTTGGCGCCTGTCTTCGATCTGATTACATCATCACCTTTTGCCCCATCTCCTTGTACTAG | 882 | 0.5204 | MALNPNSKTSILFHMLLFILGGNVASAAVFILENHCTQTVWPGISGNGAATLGGGGXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXGGGFTLQPGSAVNLTAPSGWSGRIWARTGCSFDGSGNGKCVTGDCAGGLKCTGSGVPPATLAEFTIGNDGFDLYDVSLVDGYNVGMSVQATEGCGATGCAADLNAACPAELQVRDGGGAVVACKSACTAFNTAEYCCTGDYSSPGTCPPTRYSDFFKSACPLAYSYAFDEDGFDLGACLRSDYIITFCPISLY | 293 |
Annotation information
| Select | Seq ID | Length | Analysis | Description | Start | End | IPR | GO |
|---|---|---|---|---|---|---|---|---|
| Cca05g00247 | 293 | ProSiteProfiles | Thaumatin family profile. | 27 | 289 | IPR001938 | - | |
| Cca05g00247 | 293 | PIRSF | PR5 | 92 | 292 | IPR001938 | - | |
| Cca05g00247 | 293 | PIRSF | PR5 | 1 | 67 | IPR001938 | - | |
| Cca05g00247 | 293 | PANTHER | PATHOGENESIS-RELATED PROTEIN 5-RELATED | 101 | 290 | - | - | |
| Cca05g00247 | 293 | Pfam | Thaumatin family | 100 | 289 | IPR001938 | - | |
| Cca05g00247 | 293 | ProSitePatterns | Thaumatin family signature. | 136 | 151 | IPR017949 | - | |
| Cca05g00247 | 293 | SUPERFAMILY | Osmotin, thaumatin-like protein | 99 | 289 | IPR037176 | - | |
| Cca05g00247 | 293 | SMART | tha2 | 101 | 289 | IPR001938 | - | |
| Cca05g00247 | 293 | PANTHER | OS03G0233200 PROTEIN | 101 | 290 | IPR001938 | - | |
| Cca05g00247 | 293 | PANTHER | OS03G0233200 PROTEIN | 9 | 57 | IPR001938 | - | |
| Cca05g00247 | 293 | Gene3D | Thaumatin | 28 | 289 | IPR037176 | - | |
| Cca05g00247 | 293 | PANTHER | PATHOGENESIS-RELATED PROTEIN 5-RELATED | 9 | 57 | - | - | |
| Cca05g00247 | 293 | CDD | TLP-PA | 29 | 288 | - | - |
Duplication type information
| Select | Gene | Chromosome | Start | End | Duplicated_type |
|---|---|---|---|---|---|
| Cca05g00247 | Cca-Chr5 | 5270627 | 5272975 | Tandem |
Event-related genes
| Select | Gene_1 | Chr_1 | Start_1 | End_1 | Gene_2 | Chr_2 | Start_2 | End_2 | Event_name |
|---|---|---|---|---|---|---|---|---|---|
| Cca05g00247 | 05 | 5270627 | 5272975 | Cca05g00247 | 05 | 5270627 | 5272975 | ECH |