Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cca05g00246 ATGGCCCTAAAATCCTCTCCACTCTTCCACCTCTTCCTCTTTTTCTTAGGCAATGTAGCATCTGCCACAGTGTTTAGACTGGAAAACCACTGCAGAGAAACAGTTTGGCCAGGGACACTTTCCGGCAACGGCGCCGCCATTCTCGGCGACGGAGGTTTCCCCCTGCCGCCGGGAGCGGCGGTTCAACTAACCGCACCATCGGGCTGGTCGGGCCGCTTCTGGGCCCGGACCGGGTGCAGCTTCGACGGCGCCAGTAACGGCAACAAGGACTTCTACGACGTGAGTCTGGTGGACGGTTACAACGTGGGCATGGGAGTGCGGGCTACCGGGGGAACCGGTGATTGCCAGTTCGCGGGGTGCGTGTCGGACCTCAACCGCGGGTGCCCGGCGGAGCTGCAGGTGAGGAACGGCGGCGCGGTGGTGGCGTGCAAGAGCGCGTGCATTGCTTTCAACACGCCGGAGTTTTGCTGCACCGGCGAGCACTCGACGCCGCAGACATGTTCTCCGACGCATTTTTCGGAGATATTCAAGAATGCGTGTCCGGCAGCGTATAGTTATGCTTACGATGATGCTTCCAGCACTTGCACTTGTTCTGGATCTGATTACACCATCACCTTCTGCCCCACCTCATGA 633 0.5956 MALKSSPLFHLFLFFLGNVASATVFRLENHCRETVWPGTLSGNGAAILGDGGFPLPPGAAVQLTAPSGWSGRFWARTGCSFDGASNGNKDFYDVSLVDGYNVGMGVRATGGTGDCQFAGCVSDLNRGCPAELQVRNGGAVVACKSACIAFNTPEFCCTGEHSTPQTCSPTHFSEIFKNACPAAYSYAYDDASSTCTCSGSDYTITFCPTS 210
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cca05g00246 210 PANTHER PATHOGENESIS-RELATED PROTEIN 5 19 87 - -
Cca05g00246 210 PANTHER PATHOGENESIS-RELATED PROTEIN 5 87 208 - -
Cca05g00246 210 CDD TLP-PA 24 207 - -
Cca05g00246 210 Gene3D Thaumatin 23 85 IPR037176 -
Cca05g00246 210 Gene3D Thaumatin 86 208 IPR037176 -
Cca05g00246 210 PRINTS Pathogenesis-related protein signature 72 83 IPR001938 -
Cca05g00246 210 PRINTS Pathogenesis-related protein signature 24 36 IPR001938 -
Cca05g00246 210 PRINTS Pathogenesis-related protein signature 198 207 IPR001938 -
Cca05g00246 210 SUPERFAMILY Osmotin, thaumatin-like protein 24 208 IPR037176 -
Cca05g00246 210 PIRSF PR5 84 210 IPR001938 -
Cca05g00246 210 PIRSF PR5 2 88 IPR001938 -
Cca05g00246 210 Pfam Thaumatin family 29 84 IPR001938 -
Cca05g00246 210 Pfam Thaumatin family 85 208 IPR001938 -
Cca05g00246 210 ProSiteProfiles Thaumatin family profile. 22 210 IPR001938 -
Cca05g00246 210 PANTHER OS03G0233200 PROTEIN 19 87 IPR001938 -
Cca05g00246 210 PANTHER OS03G0233200 PROTEIN 87 208 IPR001938 -
Cca05g00246 210 SMART tha2 25 208 IPR001938 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Cca05g00246 Cca-Chr5 5265752 5267367 Tandem