Gene search


Sequence information


Select Gene Cds Cds_length GC_content Pep Pep_length
Cca05g00244 ATGAACCACTTACTATTACTACTTCCCATCACTCTCTCCCTCTTCTTCACCCCATGTCTctcaaactcaaacacaaacactaacaaactgaaattcaaaGAAGCCCCGGAATTCTACAACTCCCGACACTGCCCCTCAATAGAAAAAAACGACATCCTCTGCTCGGAGGAAGGCGTACAGGTGGCAATGACCCTCGACAGAACCTACCTCCGAGGATCCATGGCGGCCATCCTGTCCGTCCTCCAACACTCGTCATGCCCCCAAAACATCTTCTTCCACTTCGTAGCCTCCTCCAACAGCACCACCCTCCTCCACTCCACAATCTCCACCACCTTCCCCTACCTAAACTTCCATCTCTACCCCTTCCGCCACGACGTCGTTGCGGGGCTCATCTCCACCTCCATCCGCGCCGCACTCGATTGCCCCCTCAACTACGCCCGCAGCTACCTCCCCAACCTCCTCCCCCTCTGCGTGAAGCGCGTCGTATACCTCGACTCCGACCTCGTACTCGTCGACGACATCGCCAAGCTCGCGAAAACCCCCTTACACAAAAACGCAGTCTTGGCGGCACCCGAGTACTGCAACGCCAATTTCACCTCCTACTTCACCCCCACCTTCTGGTCCAACCCTTCTCTCTCTCTCACCTTCGCCGACCGGAACGCCTGCTACTTCAACACGGGGGTCATGGTCATCCACCTGGAGCGGTGGCGCCTGGGGGACTACACCACGAAGATTGAGGAGTGGATGGAGGTGCAGAAGAGGATGAGAATCTACGAACTGGGGTCGTTGCCCCCGTTTTTGCTTGTGTTTGCTGGGAACATTGTTCCCGTGGATCATAGGTGGAACCAGCACGGTCTCGGAGGGGACAACTTTCGTGGTCTGTGTCGGGATCTCCACCCTGGTCCTGTTAGTTTGTTGCATTGGAGTGGCAAGGGGAAACCTTGGGTCAGGTTGGACGCTAATAGGCCTTGTCCTTTGGATGCACTTTGGGCACCTTATGATCTCTTGCAAACACCTTTCTCTTTAGATTCCTGA 1035 0.5372 MNHLLLLLPITLSLFFTPCLSNSNTNTNKLKFKEAPEFYNSRHCPSIEKNDILCSEEGVQVAMTLDRTYLRGSMAAILSVLQHSSCPQNIFFHFVASSNSTTLLHSTISTTFPYLNFHLYPFRHDVVAGLISTSIRAALDCPLNYARSYLPNLLPLCVKRVVYLDSDLVLVDDIAKLAKTPLHKNAVLAAPEYCNANFTSYFTPTFWSNPSLSLTFADRNACYFNTGVMVIHLERWRLGDYTTKIEEWMEVQKRMRIYELGSLPPFLLVFAGNIVPVDHRWNQHGLGGDNFRGLCRDLHPGPVSLLHWSGKGKPWVRLDANRPCPLDALWAPYDLLQTPFSLDS 344
       

Annotation information


Select Seq ID Length Analysis Description Start End IPR GO
Cca05g00244 344 Gene3D Spore Coat Polysaccharide Biosynthesis Protein SpsA; Chain A 60 324 IPR029044 -
Cca05g00244 344 PANTHER GALACTURONOSYLTRANSFERASE-LIKE 1-RELATED 10 344 - -
Cca05g00244 344 SUPERFAMILY Nucleotide-diphospho-sugar transferases 60 335 IPR029044 -
Cca05g00244 344 Pfam Glycosyl transferase family 8 61 317 IPR002495 GO:0016757
Cca05g00244 344 PANTHER GLYCOSYLTRANSFERASE 8 DOMAIN-CONTAINING PROTEIN 10 344 - -
       

Duplication type information


Select Gene Chromosome Start End Duplicated_type
Cca05g00244 Cca-Chr5 5190418 5191737 Dispersed/Wgd
       

Event-related genes


Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Cca05g00244 05 5190418 5191737 Cca05g00244 05 5190418 5191737 ECH
Cca05g00244 05 5190418 5191737 Cca07g00387 07 5077093 5079049 PCT