Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cca05g00242 ATGGGTTGGCTTAGCAGAATTTTTAAGGGCTCCGACCAGAAGATTTCGGAAGGGCATTGCTATAAAGAGGATGCGGATTATTATTTGCCGTCGACTTCAGGGGATGCTTGGAACCAGAACCAGAACGAGAATGAAGATATAGATCGTGCTATTGCACTGTCTCTGGTGGAAGAGAGTCAGAAAGCAAACAATGTAAATGATTACAGATCACAATTAGAAGAAGATGAACAACTTGCCAGAGCTATAGAAGAAAGTCTAAATGTGGAGTCTCCTCCCAGATATGGAAATGAAAATATGTATCAACCACCTCAGTATTTCCCCATGGGGTCCAGGATTTGTGCTGGATGCTATGCTGAGATTGGTTATGGACGATATCTAAATTGCTTGAATGCATTCTGGCATCCTGAATGCTTTCGCTGCCGTGCTTGCAACCTACCAATCTCTGATTATGAGTTCTCCACCTCTGGGAATTACCCTTACCATAAAGCATGCTATAAGGAAAGCTACCATCCGAAATGTGATGTCTGCAAGCACTTTATTCCAACAAATCCTGCTGGTCTTATTGAATATAGGGCACATCCCTTCTGGATCCAGAAATATTGCCCTTCTCATGAACATGATGGTACTCCACGCTGTTGCAGCTGTGAGCGAATGGAGTCACAAGAGGCAGGATATATTCCTCTTAAGGATGGCCGGAAGCTCTGCTTAGAGTGTCTGGATTCTGCTATCATGGATACTAATGATTGCCAACCCCTTTATGCTGATATACAACGATTTTATGAAAGCCTAAATATGAAACTGGATCAGCAAGTTCCACTACTATTGGTTGAAAGACAAGCTCTGAATGAAGCAAGAGAGGGAGAGAAGAATGGCCATTATCACATGCCGGAAACCAGAGGGCTCTGCCTCTCAGAGGAGCTCAGCAATATCTCGAGACGACCTAGACTTGGGGCAGGAAATGGAGCTATGGACATGATAGCACAGCCATACAGACTGACTTCACGCTGTGATGTGACAGCAATTCTCATTTTATACGGTCTTCCAAGGTTGCTTACTGGTTCGATCCTAGCTCATGAGATGATGCATGCATGGCTGCGGCTTAAAGGTTATCGAACTCTAAGTCAGGATGTTGAAGAAGGAATCTGTCAGGTTTTGGCTCATATGTGGTTGGAGTCTGAACTTTCTTCTGCTTCAGGCAGCAACTTTGTATCAACGTCATCCTCATCTGCATCACACACATCTAGGAAAGGTAAAAGACCTCCGTTTGAGAGGAAGCTTGGGGAGTTCTTCAAGCATCAGATTGAATCAGACATTTCCCCTGTTTATGGAGGTGGCTTTAGGGCGGGTCAAAAAGCAGTGCGTCAGTTTGGTCTACAAAGGACCCTTCACCATATCAGGATGACGGGGAGTTTTCCATATTAA 1422 0.4437 MGWLSRIFKGSDQKISEGHCYKEDADYYLPSTSGDAWNQNQNENEDIDRAIALSLVEESQKANNVNDYRSQLEEDEQLARAIEESLNVESPPRYGNENMYQPPQYFPMGSRICAGCYAEIGYGRYLNCLNAFWHPECFRCRACNLPISDYEFSTSGNYPYHKACYKESYHPKCDVCKHFIPTNPAGLIEYRAHPFWIQKYCPSHEHDGTPRCCSCERMESQEAGYIPLKDGRKLCLECLDSAIMDTNDCQPLYADIQRFYESLNMKLDQQVPLLLVERQALNEAREGEKNGHYHMPETRGLCLSEELSNISRRPRLGAGNGAMDMIAQPYRLTSRCDVTAILILYGLPRLLTGSILAHEMMHAWLRLKGYRTLSQDVEEGICQVLAHMWLESELSSASGSNFVSTSSSSASHTSRKGKRPPFERKLGEFFKHQIESDISPVYGGGFRAGQKAVRQFGLQRTLHHIRMTGSFPY 473
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cca05g00242 473 Coils Coil 65 85 - -
Cca05g00242 473 Pfam LIM domain 113 167 IPR001781 -
Cca05g00242 473 ProSiteProfiles LIM domain profile. 111 171 IPR001781 -
Cca05g00242 473 CDD LIM_DA1 113 165 - -
Cca05g00242 473 ProSiteProfiles Ubiquitin-interacting motif (UIM) domain profile. 73 92 IPR003903 -
Cca05g00242 473 Pfam Protein DA1 263 468 IPR022087 -
Cca05g00242 473 SMART uim 73 92 IPR003903 -
Cca05g00242 473 SMART uim 42 61 IPR003903 -
Cca05g00242 473 ProSiteProfiles Ubiquitin-interacting motif (UIM) domain profile. 42 61 IPR003903 -
Cca05g00242 473 SUPERFAMILY Glucocorticoid receptor-like (DNA-binding domain) 139 193 - -
Cca05g00242 473 SMART lim_4 112 164 IPR001781 -
Cca05g00242 473 ProSitePatterns LIM zinc-binding domain signature. 113 147 IPR001781 -
Cca05g00242 473 PANTHER PROTEIN DA1-LIKE 1 473 - -
Cca05g00242 473 SUPERFAMILY Glucocorticoid receptor-like (DNA-binding domain) 105 138 - -
Cca05g00242 473 Gene3D Cysteine Rich Protein 107 184 - -
Cca05g00242 473 PANTHER PROTEIN DA1-RELATED 2 1 473 IPR045218 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Cca05g00242 Cca-Chr5 5142901 5151450 Wgd
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TR Others Cca05g00242 DA1-like 2.8e-94 CL0126
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Cca05g00242 05 5142901 5151450 Cca05g00242 05 5142901 5151450 ECH