Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cca05g00239 ATGGAATCTTCACTACTGGATAACCGTGGCAACTCTAGTCATGTTAAGAAGGAGAAGCCACAAAACTTGGTCCAGAGATTCGGATTTGAGTCAAAAAAGCTATGGATACTAGCAGGCCCTGCTATTCTGACTTCTATATGTCAGTACTCTCTTGGTGCACTCACCCTAACATTTGCTGGCCTTGTTGGTGAGCTAGATCTTGCAGCAGTTTCTGTTGAAAATAATGTTATTTCTGGGCTTGCCTATGGAATCATGTTGGGTATGGGGAGTGCTTTGGAGACTCTGTGTGGGCAAGCATATGGTGCTGGTCAGATGAGGATGTTGGGAGTGTATATGCAGAGATCATGGCTCATTGTGGTCACTACTGCTGTTATTTCGGTACCTCTTTATGTTTGGTCACCTCCCATATTGAAGTTCATAGGACAGACTACTCAGATTGCAGATGCTGCTGGAAAATTTGCTGTATGGATGATACCACAATTGTTTGCATACGCTATAAACTTTCCAATCCAAAAGTTCTTACAGGCACAGGGGAAAGTCCTGGTGATGTTATGGATATCAACAGTTGTTTTGGTGTTACACACTTTTTTTAGTTGGCTTCTTATATGGAAGTTGGGATGGGGATTAATTGGAGCAGCAATTACTCTAAACACATCATGGTGGTTGATTGTCATTGCACAATTGTCGTACATTTTCATCACTAAATCAGACGGAGCTTGGAGTGGATTCACATGGCTAGCTTTTGTAGACTTGTTTGGTTTTCTAAAGCTTTCTTTGGCTTCAGCTGTTATGTTATGCTTGGAGTTTTGGTATTTGATGATACTAGTGGTGATAGCAGGTCGTTTGGAAAATCCAGTAATAACTGTTGATGCCATATCTATCTGTATGAACTTAAATGGATGGGATGCCATGATCGCAATTGGGTTCAATGCTGCTATAAGTGTGAGAGTATCAAATGAACTAGGGGCTGGGAATTTTCGGGCTGCAAAGTTTTCAGTGTGGGTGGTTTCGATCACATCAGTATCCATAGGTATTGTTGCCATGATCATAGTGCTAGCAACAAGGGGTTACTTTCCATACTTGTTTACCACGAGTGTTGCAGTTGCCAAGGAAACAACTATGCTTGCTGCTTTGCTTGGTGTTACAGTACTTCTAAACAGCCTTCAAATGGTCTTGTCTGGTATTGCTGTTGGAGCTGGTTGGCAATCTCTAGTAGCATACATCAACGTTGGGTGTTACTATATTGTTGGATTACCAGCAGGGATAGTCTTGGGATTCACGTTTGGTTTTGGAGCAGAGGGTATTTGGTCAGGGATGATTGGAGGCTTAGTTTTGCAGACAATAATCCTTATAATCATCACTTCAATAACTAACTGGGAAAAAGAGGCAGAAGAAGCTGAGAGTCGTGTGAGAAAGTGGGGAGGATCAATTTTGTGA 1437 0.4189 MESSLLDNRGNSSHVKKEKPQNLVQRFGFESKKLWILAGPAILTSICQYSLGALTLTFAGLVGELDLAAVSVENNVISGLAYGIMLGMGSALETLCGQAYGAGQMRMLGVYMQRSWLIVVTTAVISVPLYVWSPPILKFIGQTTQIADAAGKFAVWMIPQLFAYAINFPIQKFLQAQGKVLVMLWISTVVLVLHTFFSWLLIWKLGWGLIGAAITLNTSWWLIVIAQLSYIFITKSDGAWSGFTWLAFVDLFGFLKLSLASAVMLCLEFWYLMILVVIAGRLENPVITVDAISICMNLNGWDAMIAIGFNAAISVRVSNELGAGNFRAAKFSVWVVSITSVSIGIVAMIIVLATRGYFPYLFTTSVAVAKETTMLAALLGVTVLLNSLQMVLSGIAVGAGWQSLVAYINVGCYYIVGLPAGIVLGFTFGFGAEGIWSGMIGGLVLQTIILIIITSITNWEKEAEEAESRVRKWGGSIL 478
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cca05g00239 478 Pfam MatE 40 200 IPR002528 GO:0015297|GO:0016020|GO:0042910|GO:0055085
Cca05g00239 478 Pfam MatE 261 421 IPR002528 GO:0015297|GO:0016020|GO:0042910|GO:0055085
Cca05g00239 478 PANTHER PROTEIN DETOXIFICATION 33 16 466 - -
Cca05g00239 478 PANTHER MULTIDRUG RESISTANCE PROTEIN 16 466 - -
Cca05g00239 478 CDD MATE_eukaryotic 30 465 IPR045069 GO:0042910|GO:1990961
Cca05g00239 478 TIGRFAM matE: MATE efflux family protein 40 436 IPR002528 GO:0015297|GO:0016020|GO:0042910|GO:0055085
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Cca05g00239 Cca-Chr5 5104947 5110924 Proximal
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Cca05g00239 05 5104947 5110924 Cca05g00239 05 5104947 5110924 ECH