Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cca05g00229 ATGGCGAAATCAAGCGCCGACGACGGCGAGCTCCGGCGAGCTTGCGACGCCGCAATTGAGGACCCGAAGCAGAAGATCGTGATGGCGCTACGCGTTGCCAAGAGCCACGGGATCTTAGGAAAATCTTCCAAGCTTGGTCGTCAAATGGCCAAGCCTAGGGTTCTCGCTCTCTCCACGAAATCGAAAGGTCAGCGGACAACGGCTTTTCTTCGAGTTTTGAAGTATTCTACTGGAGGAGTTCTTGAACCTGCAAAACTATACAAGCTAAAGCATCTCTCAAAAGTGGAAGTTGTAACAAATGATCCCAGTGGATGTACATTTACTCTGGGATTTGATAACCTTAGAAGCCAGAGTGTGGCTCCTCCTCAATGGACAATGCGCAATATTGATGACAGGAATCGCCTCCTTCTATGCGTCTTGAACATCTGCAAAGATGTTTTGGGTCGTCTTCCTAAGGTTGTTGGTATAGATGTTGTGGAGATGGCTCTTTGGGCTAAGGAAAATACACCCCCTGTTTCGGTTCAAAATAAAGTGCGAGATGGTGGTCCTGTTGCATCTGCTGTGACTGAGACAGAATTGAAAGTCAATGTTGAAAAGGAGCTGGTCTCACAGGCAGAGGAAGAGGACATGGAGGCTCTTTTGGGAACTTATGTCATGGGTATTGGTGAAGCAGAGGAGTTTTCTGAAAGGTTGAAGAGAGAGCTCCAGGCTCTGGAAGCAGCAAATGTGCATTCTATTTTAGAAAGTGAACCTTTGATGGATGAGGTGATGCAAGGGCTTGAAGCAGCAACCAGCTGTGTGGAAGATATGGATGAATGGTTAAGCATATTCAATGTAAAACTCCGGCATATGAGGGAGGATATTGCATCAATAGAAACCCGCAATAATAACCTGGAAATGCAATCGGTAAATAACAAATCTCTCATTGAGGAGCTTGATAAGCTTCTTGAGCGATTGCGTGTGCCTTCTGAGTATGCAGCAAGTTTGACCGGAGGTTCATTTGATGAAGCTCGAATGCTTCAAAATGTAGAAGCATGTGAATGGTTGACCAATGCCTTGCGTGGTCTTGATGCACCTAATCTAGACCCTAGTTATGCAAACATGAGAGCTGTTAAAGAGAAGCGTGCAGAACTTGAAAAATTGAAATCTACTTTCGTCAGGAGAGCCTCCGAATTCTTGAGAAATTATTTTGCTAGTTTGGTGGACTTCATGATAAGTGATAAAAGTTACTTTTCTCAGCGGGGACAGTTAAAGAGGCCAGATCATGCTGACCTGCGGTACAAGTGCAGGACATATGCACGTCTTCTGCAACATTTGAAGAGTCTTGACAAGAATTGCCTGGGTCCACTGAGAAAAGCTTATTGCAGTTCTCTAAACTTGCTTCTTCGCAGAGAGGCCCGTGAGTTTGCAAATGAACTTCGTGCCAGTACTAAAGCCTCTAGAAATCCAACTGTTTGGCTTGAAGGTTCCACAGGTTCTGGTCAGAATGTAAATGCTACTGACACTTCCACAGTCTCTGATGCTTATGCAAAGATGCTTACAATTTTTATCCCACTTTTGGTGGATGAGAGTTCTTTTTTTGCACACTTCATGTGTTTTGAAGTTCCTACACTGGTTCCTCCTGGAGGTGTTGTTAATGGCAACAAAACTGgatatgatgatgatgatgatTTGGGAATTATGGACATTGATGAAAATGATAGCAAATCTGGTAAAAATTCTGCGGAGCTTGCAGCTTTGAATAAATCACTTAAAGATTTACTTGATGGAATTCAAGAAGACTTTTATGCTGTTGTAGACTGGGCATACAAGATTGATCCTTTACGCTGTATATCAATGCACGGAATAACAGAACGCTATCTCTCTGGTCAGAAAGCTGATGCAGCAGGATTTGTACGTGATTTGCTGCGTGACTTGGAGTCTCGGATATCTATGCAGTTCAACCGTTTTGTTGATGAAGCTTGCCATCAAATTGAAAGAAATGAACGCAATGTTCGCCAAATGGGTGTCCTATCTTACATTCCCAGATTTGCAACCCTTGCAACTCGCATGGAGCAGTACATCCAGGGTCAGTCTAGGGATTTGGTTGATCAAGCATACACAAAATTTGTTAGCATAATGTTTGCAACTTTAGAAAAAATTGCACAAACAGATCCAAAGTATGCAGACATTTTTCTTTTTGAGAACTATGCTGCCTTTCAGAATAGTTTGTATGACCTCGCCAACATTGTGCCCACTCTGGCAAAGTTTTATCATCAGGCCAGTGAAGCCTATGAACAAGCTTGTACACGCCATATTAGCATGATTATCTACTATCAATTTGAACGCCTATTCCAGTTTGCTCGAAGGATTGAGGACTTGATGTTCACTGTTGCACCTGAGGAGATTCCTTTTCAGCTTGGGCTGTCAAAAATGGATCTCCGGAAGATGTTAAAATCTAGTTTATCTGGGGTTGACAAGTCCATTGCTGCGATGTATAAGAAACTGCAGAAGAATTTGACTTCAGAGGAACTGTTACCCTCCTTATGGGACAAATGCAAGAAGGAGTTTCTTGATAAGTACGAAAGTTTTGCCCAACTTGTGGCTAGGATTTACCCTACGGAGACAATCCCATCTTTCTGTTTCAGCGGTCTGTATAGGACCGAGTTGCTTATAGACACCCTTCAGGCAGTACGAAGGATACATACTAAGATTAGATGGAAGCCAATGATACGGGCTGTCGCCTTCATATAA 2733 0.4292 MAKSSADDGELRRACDAAIEDPKQKIVMALRVAKSHGILGKSSKLGRQMAKPRVLALSTKSKGQRTTAFLRVLKYSTGGVLEPAKLYKLKHLSKVEVVTNDPSGCTFTLGFDNLRSQSVAPPQWTMRNIDDRNRLLLCVLNICKDVLGRLPKVVGIDVVEMALWAKENTPPVSVQNKVRDGGPVASAVTETELKVNVEKELVSQAEEEDMEALLGTYVMGIGEAEEFSERLKRELQALEAANVHSILESEPLMDEVMQGLEAATSCVEDMDEWLSIFNVKLRHMREDIASIETRNNNLEMQSVNNKSLIEELDKLLERLRVPSEYAASLTGGSFDEARMLQNVEACEWLTNALRGLDAPNLDPSYANMRAVKEKRAELEKLKSTFVRRASEFLRNYFASLVDFMISDKSYFSQRGQLKRPDHADLRYKCRTYARLLQHLKSLDKNCLGPLRKAYCSSLNLLLRREAREFANELRASTKASRNPTVWLEGSTGSGQNVNATDTSTVSDAYAKMLTIFIPLLVDESSFFAHFMCFEVPTLVPPGGVVNGNKTGYDDDDDLGIMDIDENDSKSGKNSAELAALNKSLKDLLDGIQEDFYAVVDWAYKIDPLRCISMHGITERYLSGQKADAAGFVRDLLRDLESRISMQFNRFVDEACHQIERNERNVRQMGVLSYIPRFATLATRMEQYIQGQSRDLVDQAYTKFVSIMFATLEKIAQTDPKYADIFLFENYAAFQNSLYDLANIVPTLAKFYHQASEAYEQACTRHISMIIYYQFERLFQFARRIEDLMFTVAPEEIPFQLGLSKMDLRKMLKSSLSGVDKSIAAMYKKLQKNLTSEELLPSLWDKCKKEFLDKYESFAQLVARIYPTETIPSFCFSGLYRTELLIDTLQAVRRIHTKIRWKPMIRAVAFI 910
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cca05g00229 910 Coils Coil 188 208 - -
Cca05g00229 910 Pfam Exocyst complex component Sec3 576 866 IPR019160 GO:0000145|GO:0006887
Cca05g00229 910 Pfam Exocyst complex component Sec3 224 485 IPR019160 GO:0000145|GO:0006887
Cca05g00229 910 Coils Coil 281 318 - -
Cca05g00229 910 SMART Sec3_PIP2_bind_2 48 146 IPR028258 -
Cca05g00229 910 Coils Coil 221 241 - -
Cca05g00229 910 PANTHER SEC3/SYNTAXIN-RELATED 1 873 - -
Cca05g00229 910 Pfam Exocyst complex component SEC3 N-terminal PIP2 binding PH 49 144 IPR028258 -
Cca05g00229 910 PANTHER EXOCYST COMPLEX COMPONENT SEC3B 1 873 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Cca05g00229 Cca-Chr5 4932791 4958944 Dispersed/Wgd
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Cca05g00229 05 4932791 4958944 Cca05g00229 05 4932791 4958944 ECH
Cca05g00229 05 4932791 4958944 Cca07g00390 07 5101681 5135601 PCT