Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cca05g00226 ATGTTgggggaggcggaggcgagaatgtggaggacggacgaggagtgcacgatgaggagcagcagCGGGGCCTCGCCGATGAGTCCGTACTGCTACGAGCAGGGGAGGCTGAGCGGAGAAAGCTCGCCGATGATGATGTCACCATGGAACCAAACAACGAATTCACCCTTCGCCAAGCCTCACTGGTCCTGCCACCAGCAAGACGAGGACATCCCTCCCAACGCCCTCATAGGGTCTCTGGTGCGGGAGGAGGGACACATCTACTCCCTCGCCGCCTCCGGTGACCTCTTGTACACAGGCTCCGACAGCAAGAACATTCGCGTCTGGAAGAATCTTCACGAGTACTGCGGCTTCAAGTCCAACAGCGGTTTGGTCAAAACCATCATTCTCTCTGCCCACAAAATCTTCACCGGTCACCAAGACGGCAAAATCCGCGTCTGGAAGGTTTCCCCCAAGAACCCTAGCGTCCACAAACGCGCTGGCACTTTGCCCACTCTCAAGGATATCTTCAAGAGTTCTATTAAGCCCAGCAACTACGTCGAGGTTCGGCGACACAAAACGGCATTATGGATAAAGCATTCGGACGCCGTTTCGTGCTTGAGTCTCTCGGACGATAAAACGTATCTGTATTCGGCGTCGTGGGACAGGACGATAAAGGTGTGGAGGATATCGGACTCCAAGTGCCAGGAGTCGATCCACGCGCACGACGACGCGGTGAACGCGGTGGTGTGCGGCAGCGAGGCGACCATGTTCTCCGGCTCGGCGGACGGGACGGTGAAGGTGTGGCGGAGGGAGCCGCGGGGGAAGGGGCTGAAGCACGCGCCGGTGAGGACGCTCCTGAAGCAGGAGTGCGCGGTGACGGCGCTGGCGGTGGACGCGACGGGCACCATGGTGTACTGCGGCGCCTCCGACGGCCTGGTGAACTTCTGGGAGCGCGAGAAGAACTACGCCCACGGCGGCGTCCTGAAGGGCCACAAGCTGGCCGTGCTGTGCCTGACGGCGGCGGGGGCGCTAGTGTTCAGCGGGTCCGCCGACAAGACGATATGCGTGTGGAAGAGGGAGGGCGTGATCCACACGTGCGTGTCGGTGCTGACGGGGCACGACGGCCCCGTGAAGTGCCTGGCCGTGGAGGAGGACCGCGAAGCCACCGCGAGAGGCGACCGGCGATGGATTGTGTACAGTGGAAGTTTGGATAAGTCGGTTAAGGTGTGGAGCGTTTCGGAAACGATGAACAATAGCAACCAAAATAATAATCTGGTGCTGCACCACCGCGTGGCTTCCGATGCGGACTCGTTGCCTTCCGAATCCGATAGTAGTTTCTCTTCGGGCCGGCCCAACTGGAAGAACTGA 1350 0.5719 MLGEAEARMWRTDEECTMRSSSGASPMSPYCYEQGRLSGESSPMMMSPWNQTTNSPFAKPHWSCHQQDEDIPPNALIGSLVREEGHIYSLAASGDLLYTGSDSKNIRVWKNLHEYCGFKSNSGLVKTIILSAHKIFTGHQDGKIRVWKVSPKNPSVHKRAGTLPTLKDIFKSSIKPSNYVEVRRHKTALWIKHSDAVSCLSLSDDKTYLYSASWDRTIKVWRISDSKCQESIHAHDDAVNAVVCGSEATMFSGSADGTVKVWRREPRGKGLKHAPVRTLLKQECAVTALAVDATGTMVYCGASDGLVNFWEREKNYAHGGVLKGHKLAVLCLTAAGALVFSGSADKTICVWKREGVIHTCVSVLTGHDGPVKCLAVEEDREATARGDRRWIVYSGSLDKSVKVWSVSETMNNSNQNNNLVLHHRVASDADSLPSESDSSFSSGRPNWKN 449
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cca05g00226 449 ProSiteProfiles Trp-Asp (WD) repeats profile. 322 352 IPR001680 GO:0005515
Cca05g00226 449 ProSiteProfiles Trp-Asp (WD) repeats profile. 232 262 IPR001680 GO:0005515
Cca05g00226 449 Gene3D - 180 272 IPR015943 GO:0005515
Cca05g00226 449 ProSiteProfiles Trp-Asp (WD) repeats circular profile. 190 227 - -
Cca05g00226 449 ProSiteProfiles Trp-Asp (WD) repeats profile. 190 231 IPR001680 GO:0005515
Cca05g00226 449 MobiDBLite consensus disorder prediction 428 449 - -
Cca05g00226 449 Gene3D - 6 172 IPR015943 GO:0005515
Cca05g00226 449 PANTHER F-BOX AND WD40 DOMAIN PROTEIN 12 437 IPR045182 -
Cca05g00226 449 Gene3D - 273 448 IPR015943 GO:0005515
Cca05g00226 449 MobiDBLite consensus disorder prediction 431 449 - -
Cca05g00226 449 CDD WD40 84 405 - -
Cca05g00226 449 PRINTS G protein beta WD-40 repeat signature 209 223 IPR020472 -
Cca05g00226 449 PRINTS G protein beta WD-40 repeat signature 250 264 IPR020472 -
Cca05g00226 449 PRINTS G protein beta WD-40 repeat signature 392 406 IPR020472 -
Cca05g00226 449 Pfam WD domain, G-beta repeat 320 352 IPR001680 GO:0005515
Cca05g00226 449 Pfam WD domain, G-beta repeat 359 405 IPR001680 GO:0005515
Cca05g00226 449 Pfam WD domain, G-beta repeat 193 221 IPR001680 GO:0005515
Cca05g00226 449 Pfam WD domain, G-beta repeat 227 262 IPR001680 GO:0005515
Cca05g00226 449 Pfam WD domain, G-beta repeat 276 310 IPR001680 GO:0005515
Cca05g00226 449 Pfam WD domain, G-beta repeat 84 110 IPR001680 GO:0005515
Cca05g00226 449 SUPERFAMILY WD40 repeat-like 71 408 IPR036322 GO:0005515
Cca05g00226 449 PANTHER PROTEIN JINGUBANG 12 437 - -
Cca05g00226 449 SMART WD40_4 111 148 IPR001680 GO:0005515
Cca05g00226 449 SMART WD40_4 225 263 IPR001680 GO:0005515
Cca05g00226 449 SMART WD40_4 73 110 IPR001680 GO:0005515
Cca05g00226 449 SMART WD40_4 315 352 IPR001680 GO:0005515
Cca05g00226 449 SMART WD40_4 357 405 IPR001680 GO:0005515
Cca05g00226 449 SMART WD40_4 272 311 IPR001680 GO:0005515
Cca05g00226 449 SMART WD40_4 183 222 IPR001680 GO:0005515
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Cca05g00226 Cca-Chr5 4804657 4806691 Dispersed/Wgd
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Cca05g00226 05 4804657 4806691 Cca05g00226 05 4804657 4806691 ECH
Cca03g00952 03 23577900 23585173 Cca05g00226 05 4804657 4806691 PCT