Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cca05g00225 ATGAAAAAGAAATTAAAGCAAGAGGTAAAGCATTGCATTGATGAACTCAGCTGTAGCATTGTGGTGATGAATGGGTCACAGGCAAAAATCCACAGGCTTAACTTGGGATGTTCCGATGAACTCCAAACTCCTTTTTTCTCTGCTACTTCTTCACCAGGTATAGAAATCGGAAAGTTAAAAGGCAGAAAATTGAAGCATTCTACCCCAGTGAGTAGCCCTGAAGAAGCAGGTACTTCTGTCACGAGAAACATAGGAGTAAATTCAGGGTCAAGTTCTGGCTCGACGACTTCTCTTTTCCTAGTCTATGAACAAAACCCTCTGTACGAGGGTCAGGGCCCAGAGAAGAGAACAAACAAATCGAATGAACCAAAAGATTTTAACACCCCGCCACCATTATACTTTGATCTGGAAAGGGATCGGTCTCCCCCTTCATGGACACGTCCAACTTCATCTGTGGCTAGTGATAGCAAGACTACATTATGGATTCCTCAAAACCACATTGTAGACGAGAAGTTTCAGAAAGCTAAAAACAACAGTGTTATCCAAAGAACTAAATCTCCAACTTCGAAAACTTTACTCGAGAATTTTATACACTGTGATCAAGAGATGAGGACAAATGAAGTTGAGTTTAACCAAGCCCAAAGTAGAAGTTATATCCCCGACTCGGGCTTCAGAGATAATTCCATTCCTTTGGGCAGAACTACCTCTATACCTCCTCCCTTATGCTCTCAGTGTCAGAATAAAGCACCAGTATTTGGAAAGCCTCCTAAACGTTTTTCTTACAAAGAGCTGGAGGAAGCAACTGATATGTTCTCAGATGTCAATTTTTTGGCTGAAGGTGGATTTGGTGTGGTCCACAAGGGAATACTCAAAGATGGTCAGGTTGTTGCGGTGAAACAGTTAAAGTTTGGGGGCTCTCAAGCAGATCTTGATTTTTGCAGGGAAGTTCGGGTTTTGAGCTGTGCTCAACACAGAAATGTTGTACTGTTGATAGGTTTTTGTATAGAGGGCAATTTGAGGATATTAGTCTATGAGTACATATGCAACGGTTCCTTGGACCTCTACTTACATGGAGACGAGAGTATGCCTTTGGATTGGAACTCACGCTTAAAGATAGCGATTGGAGCTGCACGAGGCTTACGCTACCTTCATGAAGATTGTAGAGTTGGTTGTATAGTGCACAGAGACTTCCGACCCAAAAATATCCTCTTAACCCATGACTTTGAACCTCTGGTGGCTGATTTTGGGCTTGCTAGGTGGCACTCAGAATGGAATATAGATACAGAAGGTCGTGTTATAGGAACTTCAGGGTATCTAGCACCGGAGTATCTTGACGCTGGGAACCTTACATACAAAGTAGATGTATATGCATTTGGAATTGTATTATTAGAATTAATTACAAGTAGAAGAATTAGTGACTTGGAACAGTTCAATGGACACTCGTATCTATCTGAATGGTTTCACCCCCTACGCATGTTAGAGCCCAGTCATATCTTACAAAACGTTCGATCTCTCAAACCATGCTTTGATTCTGAGGAGTCGTTGGAATTTAACCTTCAAATGCAAGCCATGGCACGAGCTGCTTCGTTGTGTTTACGTGTGGATCCTGATGCCAGACCCCCAATTTCAAAGGTCCTGAGAGTGCTGGAAGGAGGAGATCCAGTTCGTCCTATGGGTTTAGACATCAATTCAGTTGGTAACACAAGTGGCCATTTAAGTGGTTTGAATTCACACACTACGCCTAAAGGTACCAGAAGTCATTCTCGAAGACTATCACATTAG 1782 0.4237 MKKKLKQEVKHCIDELSCSIVVMNGSQAKIHRLNLGCSDELQTPFFSATSSPGIEIGKLKGRKLKHSTPVSSPEEAGTSVTRNIGVNSGSSSGSTTSLFLVYEQNPLYEGQGPEKRTNKSNEPKDFNTPPPLYFDLERDRSPPSWTRPTSSVASDSKTTLWIPQNHIVDEKFQKAKNNSVIQRTKSPTSKTLLENFIHCDQEMRTNEVEFNQAQSRSYIPDSGFRDNSIPLGRTTSIPPPLCSQCQNKAPVFGKPPKRFSYKELEEATDMFSDVNFLAEGGFGVVHKGILKDGQVVAVKQLKFGGSQADLDFCREVRVLSCAQHRNVVLLIGFCIEGNLRILVYEYICNGSLDLYLHGDESMPLDWNSRLKIAIGAARGLRYLHEDCRVGCIVHRDFRPKNILLTHDFEPLVADFGLARWHSEWNIDTEGRVIGTSGYLAPEYLDAGNLTYKVDVYAFGIVLLELITSRRISDLEQFNGHSYLSEWFHPLRMLEPSHILQNVRSLKPCFDSEESLEFNLQMQAMARAASLCLRVDPDARPPISKVLRVLEGGDPVRPMGLDINSVGNTSGHLSGLNSHTTPKGTRSHSRRLSH 593
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cca05g00225 593 Gene3D Transferase(Phosphotransferase) domain 1 347 554 - -
Cca05g00225 593 MobiDBLite consensus disorder prediction 71 95 - -
Cca05g00225 593 Pfam Protein tyrosine and serine/threonine kinase 277 511 IPR001245 GO:0004672|GO:0006468
Cca05g00225 593 MobiDBLite consensus disorder prediction 562 582 - -
Cca05g00225 593 PANTHER ADENINE NUCLEOTIDE ALPHA HYDROLASE-LIKE DOMAIN KINASE 2 584 - -
Cca05g00225 593 PANTHER OS01G0253100 PROTEIN 2 584 IPR045271 GO:0004714|GO:0006468
Cca05g00225 593 ProSitePatterns Tyrosine protein kinases specific active-site signature. 392 404 IPR008266 GO:0004672|GO:0006468
Cca05g00225 593 MobiDBLite consensus disorder prediction 109 152 - -
Cca05g00225 593 Gene3D Phosphorylase Kinase; domain 1 240 346 - -
Cca05g00225 593 MobiDBLite consensus disorder prediction 64 95 - -
Cca05g00225 593 SUPERFAMILY Protein kinase-like (PK-like) 251 549 IPR011009 -
Cca05g00225 593 ProSiteProfiles Protein kinase domain profile. 271 556 IPR000719 GO:0004672|GO:0005524|GO:0006468
Cca05g00225 593 MobiDBLite consensus disorder prediction 559 593 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Cca05g00225 Cca-Chr5 4792301 4799596 Transposed
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK RLK-Pelle_PERK-2 Cca05g00225 PK_Tyr_Ser-Thr 6.2e-41 CL0016
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Cca05g00225 05 4792301 4799596 Cca05g00225 05 4792301 4799596 ECH