Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cca05g00224 ATGTTCACTAATTCACACACGGTAATGCAAACCTTGTTATCACCCTTGTCGGAGCCAGACCTCTCCTTGAACATAAGCCCTCCCTCTATTTCAGATTCTGAGGCCAAAGAAGTGGGAAGCTTCGGCAAAGTGCTTTACAACGACATGTGTTCAACTTCTGATTCGGCTAGTAGTGGAAGTGATTTGAGCCACGAGTTCCACAACCTTGGTCACCGTGAACCCACACTGAAACTGGGGTTTGGAACCGTGGATTTGAATCAACGTCGTCATCAACAAGTGCAAGGTGTTGTTCCAAGAAGCTTCAATCACCACCTCCTCCAACCTCACATCTATGGCCGTGAGTTCAAACGAAGTGCAAGAGTCGTTAATGGCGTCAAAAGAAGCGTTAGAGCTCCTAGGATGAGATGGACCACCACCCTCCATGCCCATTTTGTTCATGCGGTTCAACTTCTTGGTGGTCATGAAAGAGCAACGCCGAAGTCTGTGTTAGAGTTAATGAATGTTAAGGATCTAACCCTAGCACACGTCAAGAGTCACTTGCAGATGTATAGAACAGTGAAGAGCACTGACAAAGGCACAGGTCATGGCCACACAGATATTGGCTTCAACACAAGGCCAGGGATTAATAATGTTCATCTGCATGCACCCTCACCTAATTGTGACACACCAAATTTACCAGACCCCATTCAAAAATCCCTCAGGACACCGTGGCAATCATCAATAGAGACAAATACAAACAATAGTAGACAAGAATCGGAAATGGGTTTGACGTATTCTGAGGTGAAGGGAAACGAAATTATGGTTGATGGGCACAGTTATGGAGGCATGTCATCAAATTGCATGAAGGAGTTGGAATCTAACCCTTTGTCACGTTCCGAGGCAATGCCAATGCTTGACCTTGAATTCACCCTAGGAAGGCCCAATTGGCAAAAAGACCACGCGGAATCATCATCAAGATCAGAGTTATTAACTCTTCTCAAGTGTTAA 987 0.4529 MFTNSHTVMQTLLSPLSEPDLSLNISPPSISDSEAKEVGSFGKVLYNDMCSTSDSASSGSDLSHEFHNLGHREPTLKLGFGTVDLNQRRHQQVQGVVPRSFNHHLLQPHIYGREFKRSARVVNGVKRSVRAPRMRWTTTLHAHFVHAVQLLGGHERATPKSVLELMNVKDLTLAHVKSHLQMYRTVKSTDKGTGHGHTDIGFNTRPGINNVHLHAPSPNCDTPNLPDPIQKSLRTPWQSSIETNTNNSRQESEMGLTYSEVKGNEIMVDGHSYGGMSSNCMKELESNPLSRSEAMPMLDLEFTLGRPNWQKDHAESSSRSELLTLLKC 328
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cca05g00224 328 Gene3D - 131 188 - -
Cca05g00224 328 PANTHER MYB-LIKE DNA-BINDING DOMAIN, SHAQKYF CLASS PROTEIN 1 320 - -
Cca05g00224 328 PANTHER TRANSCRIPTION FACTOR KAN2-RELATED 1 320 IPR044847 GO:0000976|GO:0006355|GO:0010158
Cca05g00224 328 Pfam Myb-like DNA-binding domain 133 184 IPR001005 -
Cca05g00224 328 TIGRFAM myb_SHAQKYF: myb-like DNA-binding domain, SHAQKYF class 132 185 IPR006447 GO:0003677
Cca05g00224 328 SUPERFAMILY Homeodomain-like 129 186 IPR009057 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Cca05g00224 Cca-Chr5 4766908 4772265 Dispersed/Wgd
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF GARP-G2-like Cca05g00224 Myb_DNA-binding 1.4e-05 CL0123
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Cca05g00224 05 4766908 4772265 Cca05g00224 05 4766908 4772265 ECH
Cca05g00224 05 4766908 4772265 Cca07g00409 07 5373826 5378995 PCT