Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cca05g00222 ATGGGGAGCCAAAATTGTGATGGTTGCAGATCGTGGGCGGAGGACATTTACTGGTCCCATTTTCAATTCCTCCATTTTGTGCAATTTCTCCGAACGGATTATGAGCAACGCCTTGCACTTCCAAAAACATTTTCGGATAACATAAAGAAGAAGTTGCCAGAAAATGTGTCCCTTAAGGGTCCTGGTGGTGTTGTGTGGAATATAGGGCTAACCACTAGAGATGATACCTTGTACTTTGCGCATGGTTGGGAACAATTTGTGAAAGATCACTTGCTGAAAGAGAATGATCTCCTGGTCTTTAAGTACAATGGTGAATCTCAATTTGATGTTTTAATATTTGATGGGGGGAGCTTCTGTGAGAAGGCAGGTTCTTATTTTGTTCGAAAATGTGGGCACACTGAGGATGTAGGTGGAAGTCTTAATAAGAAAAAGGAAACAGCTAATTCTTTGGATGAAGGTAATTCCCCTTCAAATGTTGCTGTGGAATGTGCTTCACATGATAGAACTGTAAATGTCAATGGAATGAAGGAGCCGATGGATGTGCCTTTTGAAACTCCTATTGAGAAGACTTTCAATGCGGGTGTTGAATCTGCTGGTGCTGAGCAAGTAATGCCTGGTGGCGTTACTATTGCTTTTTCACCTGATGCTGTACCATCAGAAACTGTTAATGGTAAAAGGGTCAGGAAGCTTGTTTCTGCTGTTAGGCATGTCCAGACCAAGCGGAGGGGAAGACCAGCTAAAGTGTCTCATGTTGTTCGTGAGAGAGCACTTGACTGGGTGACTGATGCTGCTGAACCCGCATCTGCAGTTAAAAGTGCAGTTAAAAGTGGGACTGGGACATATGAGTTGTATACCTCAAATAGAAGGCCTGTCACAGAAGCTGAGACTAAAAGGGCCCATGACTTGGCTCAGGCAGCACGTACCAACGACAGTTTGGTTGTAGTCATGCGACCCTCGCATGTGTACAAGAGATTCTTTGTGTCAATGCCCAATAGGTGGATTGGAGACTATGTCTCACCAACATCTCAAGATGTTTTATTACGCATGGGCAATGGTGAATGGATCGCCAGATACAGCTACCATGCTATTCGGCACACTGGAGGACTAACTGGTGGGTGGAAACATTTTGCCCTGGATAATAACCTTGAAGAGTTTGATGTTTGTGTGTTTAAACCAGCTAGCAAAGAGAACGACACTTTGGTGATTGATATGACCATTTTTAGAGTTGTTGAGGAGATTGTTCCTCTCACTGCCGTATCCCCTGCTGGAACTGGAAGAAGGGGTAGGAAGCCAACAATGAAGACTATTCTGACAGAAACTTAG 1323 0.4399 MGSQNCDGCRSWAEDIYWSHFQFLHFVQFLRTDYEQRLALPKTFSDNIKKKLPENVSLKGPGGVVWNIGLTTRDDTLYFAHGWEQFVKDHLLKENDLLVFKYNGESQFDVLIFDGGSFCEKAGSYFVRKCGHTEDVGGSLNKKKETANSLDEGNSPSNVAVECASHDRTVNVNGMKEPMDVPFETPIEKTFNAGVESAGAEQVMPGGVTIAFSPDAVPSETVNGKRVRKLVSAVRHVQTKRRGRPAKVSHVVRERALDWVTDAAEPASAVKSAVKSGTGTYELYTSNRRPVTEAETKRAHDLAQAARTNDSLVVVMRPSHVYKRFFVSMPNRWIGDYVSPTSQDVLLRMGNGEWIARYSYHAIRHTGGLTGGWKHFALDNNLEEFDVCVFKPASKENDTLVIDMTIFRVVEEIVPLTAVSPAGTGRRGRKPTMKTILTET 440
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cca05g00222 440 ProSiteProfiles B3 DNA-binding domain profile. 312 408 IPR003340 GO:0003677
Cca05g00222 440 MobiDBLite consensus disorder prediction 137 156 - -
Cca05g00222 440 CDD B3_DNA 25 114 IPR003340 GO:0003677
Cca05g00222 440 Gene3D - 290 412 IPR015300 -
Cca05g00222 440 Pfam B3 DNA binding domain 313 402 IPR003340 GO:0003677
Cca05g00222 440 Pfam B3 DNA binding domain 35 114 IPR003340 GO:0003677
Cca05g00222 440 SUPERFAMILY DNA-binding pseudobarrel domain 311 395 IPR015300 -
Cca05g00222 440 Gene3D - 19 119 IPR015300 -
Cca05g00222 440 PANTHER BINDING PROTEIN, PUTATIVE-RELATED 253 420 - -
Cca05g00222 440 SUPERFAMILY DNA-binding pseudobarrel domain 21 114 IPR015300 -
Cca05g00222 440 MobiDBLite consensus disorder prediction 421 440 - -
Cca05g00222 440 ProSiteProfiles B3 DNA-binding domain profile. 23 116 IPR003340 GO:0003677
Cca05g00222 440 PANTHER B3 DOMAIN-CONTAINING PROTEIN OS11G0197600-RELATED 253 420 IPR044837 -
Cca05g00222 440 PANTHER B3 DOMAIN-CONTAINING PROTEIN OS11G0197600-RELATED 5 164 IPR044837 -
Cca05g00222 440 SMART B3_2 26 116 IPR003340 GO:0003677
Cca05g00222 440 SMART B3_2 312 410 IPR003340 GO:0003677
Cca05g00222 440 CDD B3_DNA 311 408 IPR003340 GO:0003677
Cca05g00222 440 PANTHER BINDING PROTEIN, PUTATIVE-RELATED 5 164 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Cca05g00222 Cca-Chr5 4723921 4727164 Dispersed
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF B3 Cca05g00222 B3 1.2e-10 CL0405