Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cca05g00219 ATGGGGTGTGAGTGTGGGGGGAAGTTGAATGTGAGAAGGCCTCATTTTTATGAGGTTTTTTCTTCTGCCTTTAGCTCTCACAGACTGAAAATTCCTAATGGATTCGTCTGTCGCATGGAGGGAAGGACATATGGATCAGTTTCGTTAACTGGTCCTAGTGGAAACACATGGGTAGTGCAATTGATTAAGCAGGACAATGATTTATTTTTCCATCATGGATGGTCAGCATTTGTGGCGGATCATCGACTAGAATGTGGTGACCTTTTGGTTTTCAGATATGAGGGTCAATTGCATTTTACTGTGCAAGTATTTGATAATGATGCATGTGAGAAAGAAGCGGCATTTCATTCTGAATGCAGTCAAAATTCATGTGACTTTGATAATATTAGAGGACAGAAAAGAGATACACAGGAGAATGCTTCTTTGGATATTGTTGGTGAAAGTGCCTCTAAGAAAATGAGAGGTAGCACTAATGAGAACCAGGAAATTGAGCTGGGTATTGTTGTTAAAGAACTACCCCGGTATGACGTAGTAAGACCAATTAGTATGTTCCGAGAAAATGATGAAACCTCCAAAGGGTGGTCCGCAAATGATGAACCTGTGCCTTTTCACATGGAAAATAGCAATGAAGATGCTTCCACCATGTATAGAAGTGGAAAGGAAGACGATCATTATGTTCTCAGTGGAGTTTCATTATCAAATGTATCAGCACATGATGAGAAAAAAGTTGCTCAGTCATTTACTTCCTCTTTTCCGTATTTTGTTAGAATCATGAAAAGCTTCAATGTCAGTGGTTCATATACTCTGAATATCCCATATCAGTTTTCAATGGCACATCTTCCCAATTGCAAGATAAAAGTTATTCTTCATAATTTGAAAGGAGAACATTGGACTGTTAATTCTGTGCCAACAACTAGAGTGCATACTAGTCACACTCTTTGTGGAGGATGGATGGCTTTTGTTCGTGGTAATAACATAAAGGTTGGAGATATCTGCATTTTTGAACTTGTGCATGAGTGTGAATTACGTGTTCACATTGCTGGAGTTGGAAAAGATGGGTTAGATTGCCAAGTTGGAAAAGTAGATATTAGTAGGTTTAGTGCAGGACATGCTGTAACTTCCAGATATATGGCAACAAATCCTAAAGTTACCCCAAAATGCATAAGAAAAGTTGATCTATCGGAAAAGAAGTGGTCAAAGATTGGTCAAGAAACTGTTTTATCTGTTGACATGAAGAAATCTGTTAGAGCTTCAAATACTTCTAAGAAAATGGGGCTTTCGAAAGCTGCCCATAAAAAGTTGGCTGTTCAGAGGAGACATCGTGTAGAAGATGAACTAAGCTCCCAGGCCAAAGCTGGTTTGAGAATGTTGTTTGCACTCGACGAACAAAGAGTAGCTCAAGCTTTTACTTCCCCTTTTCCTAGTTTTGTAAAAATCATGAAAAAGTTCAATGTCAGTGGATCATACACTTTGAAAATCCCATACCAGTTCTCAGCTGCACATCTCCCAACTTACAAAACTGAAGTTATGCTTCGTAATTCAAGAGGCGAATGTTGGACCGTGAACTCTGTCCCAGATGCAAAAGGCAGAACGGTTCACACCTTTTGTGGGGGATGGATGGCATTTGTTCGTGATAATGATATCAATTTTGGAGACACGTGCATTTTTGAACTTGTTGCTCAATGTGAGATGCAGGTTTACATATCTGGGGTTGGAAAGGAAGGCCTTGACCATCAGGTAGCTAAAACTTAA 1752 0.3944 MGCECGGKLNVRRPHFYEVFSSAFSSHRLKIPNGFVCRMEGRTYGSVSLTGPSGNTWVVQLIKQDNDLFFHHGWSAFVADHRLECGDLLVFRYEGQLHFTVQVFDNDACEKEAAFHSECSQNSCDFDNIRGQKRDTQENASLDIVGESASKKMRGSTNENQEIELGIVVKELPRYDVVRPISMFRENDETSKGWSANDEPVPFHMENSNEDASTMYRSGKEDDHYVLSGVSLSNVSAHDEKKVAQSFTSSFPYFVRIMKSFNVSGSYTLNIPYQFSMAHLPNCKIKVILHNLKGEHWTVNSVPTTRVHTSHTLCGGWMAFVRGNNIKVGDICIFELVHECELRVHIAGVGKDGLDCQVGKVDISRFSAGHAVTSRYMATNPKVTPKCIRKVDLSEKKWSKIGQETVLSVDMKKSVRASNTSKKMGLSKAAHKKLAVQRRHRVEDELSSQAKAGLRMLFALDEQRVAQAFTSPFPSFVKIMKKFNVSGSYTLKIPYQFSAAHLPTYKTEVMLRNSRGECWTVNSVPDAKGRTVHTFCGGWMAFVRDNDINFGDTCIFELVAQCEMQVYISGVGKEGLDHQVAKT 583
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cca05g00219 583 Gene3D - 8 109 IPR015300 -
Cca05g00219 583 ProSiteProfiles B3 DNA-binding domain profile. 14 107 IPR003340 GO:0003677
Cca05g00219 583 Gene3D - 235 349 IPR015300 -
Cca05g00219 583 Gene3D - 461 571 IPR015300 -
Cca05g00219 583 PANTHER B3 DNA-BINDING DOMAIN PROTEIN 1 450 - -
Cca05g00219 583 PANTHER B3 DNA-BINDING DOMAIN PROTEIN 451 582 - -
Cca05g00219 583 CDD B3_DNA 14 105 IPR003340 GO:0003677
Cca05g00219 583 CDD B3_DNA 252 346 IPR003340 GO:0003677
Cca05g00219 583 ProSiteProfiles B3 DNA-binding domain profile. 254 350 IPR003340 GO:0003677
Cca05g00219 583 SUPERFAMILY DNA-binding pseudobarrel domain 10 109 IPR015300 -
Cca05g00219 583 ProSiteProfiles B3 DNA-binding domain profile. 476 572 IPR003340 GO:0003677
Cca05g00219 583 PANTHER B3 DOMAIN-CONTAINING 1 450 - -
Cca05g00219 583 PANTHER B3 DOMAIN-CONTAINING 451 582 - -
Cca05g00219 583 SUPERFAMILY DNA-binding pseudobarrel domain 247 348 IPR015300 -
Cca05g00219 583 CDD B3_DNA 474 568 IPR003340 GO:0003677
Cca05g00219 583 SMART B3_2 476 572 IPR003340 GO:0003677
Cca05g00219 583 SMART B3_2 254 352 IPR003340 GO:0003677
Cca05g00219 583 SMART B3_2 20 107 IPR003340 GO:0003677
Cca05g00219 583 Pfam B3 DNA binding domain 476 563 IPR003340 GO:0003677
Cca05g00219 583 Pfam B3 DNA binding domain 254 346 IPR003340 GO:0003677
Cca05g00219 583 Pfam B3 DNA binding domain 20 106 IPR003340 GO:0003677
Cca05g00219 583 SUPERFAMILY DNA-binding pseudobarrel domain 469 570 IPR015300 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Cca05g00219 Cca-Chr5 4678081 4682732 Dispersed
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF B3 Cca05g00219 B3 2.8e-13 CL0405
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Cca05g00219 05 4678081 4682732 Cca05g00219 05 4678081 4682732 ECH