Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cca05g00216 ATGGCCCTGACGGAGCTCTTCACCGGCGAGATCGCCTCCGACTTATGGAAAATGCTGGTAACGATTACCCGCAAAGCCCTCCGGTGCAAGTCGAGCGCGGAGCAGTTAATAACCTACATCAGGGAGATCCTTCCGATGATCGAGGAGATAAAATACTCCGGCGTGGAGCTGCCGGCGCCGCGGCAGTCGCAGCTGGACCGCCTCTCGGAGATTCTCCGGTCCGGCGTGGAGCTCTCGCACCAGGCCCTCTCCTCCTCGCGCTGGAACGTCTACCGCAACTTCCAGCTGGCTAAGAAAATGGAGAAGCTCGAGAAGCACGTCACGAATTTCCTGCAGGTTCCCATGCAGGCGCACATACTCGCCGACGTGCACCATGCGCGGTTTGAGATGGCGGAGCGGTTCGACCGGGTGGAGGCCTCGAACCGGAGGATGGAGCGCTTCCTCGGGGAGATGAAGATCGGCGTCAACGGCGGCGGGTGGGTGGAGGAGGCTGTGAGGAGTATGCAGGAGGATGAGACGTGGGTGGAGGGGTGTAATGGGAATAATAGTTTCGGGGTTGGGTTGGATTTCGGGAAGAACAAGGTTTTGGAGATGATTTTCATGAGAAATGATGTTTCGGTTGTCGGGATTTGTGGGATTGGTGGGTCCGGGAAAACCACCCTCGCTCGAGAGCTCTGCAGAGATGACCATGTTCGATGTTATTTCAAGGAGAGAATCTTGTTTCTGACTGTGTCGCAGTCTCCAAATGTGGAGCAGCTGAGAGCGAGGATCTGGGGACACATCATGGGGAGCCAAGGTTTTCATGGCAATTATGTGGTTCCGCAATGTATGCCGCAGTTTGAGTGCAAAGGGGAAGCTCAAGTTCTGGTTGTTCTTGATGATGTGTGGTCTCTCTCCGTGCTGGAGCAGCTTGTGTGGAAAATTCCTGGCTGCAAATTCCTTGTGGTGTCCAGATTCAAATTCCCAACAATTTTTAACACCACTTATCAGGTGGAATTGTTGGGTGAAGAGGATGCACTCACTTTGTTCTGTCACCATGCCTTTGGACAGAAATCTATTCCTTTGGGTGCTAATGTGAATTTGGTCAAGCAGGTTGTGGCTGAGTGTGGAAAGCTTCCACTGGCTCTGAAGGTGATTGGAGCTTCTTTGCGCGACCAGAATGAAATGTTTTGGTTGAGTGTTAAAACCAAGCTATCTCAAGGTCAAAGCATTGGTGAATCCTATGAAATCAATCTGATTGATAGAATGGCAATCAGTACTAACTACCTGCCAGAAAAGATCAAGGAGTGTTTCTTGGACCTGTGCTCTTTTCCTGAGGATAGAAAGATTCCTCTTGAAGTTCTAATCAACATGTGGGTTGAAATCCATGACATTCACGAAACGGAAGCTTATGCCATTGTGGTGGAGCTATCAAACAAGAACCTTCTTACCTTAGTGAAAGAGGCACGTGCCGGTGGTATGTATAGCAGTTGCTTCGAGATTTCTGTCACTCAACATGATATACTGAGGGACCTTGCTCTTATTTTGAGCAAACGTGGCAGCATCCATGAACACCGAAGGCTAGTTATGCCAAAACGAGAAGAAAATGGACTTCTCCCTAGAGAGTGGTCAAGATGCAAGGACCAACCCTTTGAAGCTCAGATTGTTTCAATCAACACAGGTGAAATGACCGAAATGGACTGGTTTGAACTGGATTTCCCCAAGGCTGAAGTGTTGATTATCAATTTTGCATCCAGTGATTACTTTTTACCTCCCTTCATGAATAGAATGCCAAATTTGAGGGCATTGATAATAATAAACTACAGTACCTCATACGCTCGCCTTCATAATGTTTCAGTTTTTAGGAATTTGACCAACTTGAGGAGTTTGTGGCTTGAAAAGGTTTCCATCCCTCAGTTATCAGGCACTGTCTTGAAAAACTTGGGCAAATTGTTTATAGTTCTCTGCAAGATTAACAACAGTTTGGATGGGAAAGGGTTCCCTAACCTCTCTGAGCTCACCCTTGATCACTGTGATGATCTAACTCACATTCCCTCAAGCATTTGTGGAATGAAGTCACTCCAGAACTTGAGTCTCACGAACTGCCACAATTTGACCCAACTGCCAGATGAATTTGGCAAACTAAGATCCCTAGAGATCCTCCGTTTATATGCTTGTCCAAATCTAGAAACACTTCCCACTAGCATGTGTGACATGAAGAGATTGAAGTATATTGATATTTCTCAATGTGTTAACCTCACATGCTTCCCTAACGAGATTGGTAGATTAGTAAGCTTGGAGAAGATTGACATGAGGGAGTGCCCCATGATTAGGTATTTACCAAAATCTGCAGTGTCATTGCAATCTCTGCAGCTTGTAATTTGTGATGAGGAAGTATATGGGATGTGGAGAGATGTTGAGATGGCCAAGCCAAATCTCCATATTCAAGTATCAGAACAGTACTTTGATCTGGATTGGCTTCAAGAGTGA 2469 0.4702 MALTELFTGEIASDLWKMLVTITRKALRCKSSAEQLITYIREILPMIEEIKYSGVELPAPRQSQLDRLSEILRSGVELSHQALSSSRWNVYRNFQLAKKMEKLEKHVTNFLQVPMQAHILADVHHARFEMAERFDRVEASNRRMERFLGEMKIGVNGGGWVEEAVRSMQEDETWVEGCNGNNSFGVGLDFGKNKVLEMIFMRNDVSVVGICGIGGSGKTTLARELCRDDHVRCYFKERILFLTVSQSPNVEQLRARIWGHIMGSQGFHGNYVVPQCMPQFECKGEAQVLVVLDDVWSLSVLEQLVWKIPGCKFLVVSRFKFPTIFNTTYQVELLGEEDALTLFCHHAFGQKSIPLGANVNLVKQVVAECGKLPLALKVIGASLRDQNEMFWLSVKTKLSQGQSIGESYEINLIDRMAISTNYLPEKIKECFLDLCSFPEDRKIPLEVLINMWVEIHDIHETEAYAIVVELSNKNLLTLVKEARAGGMYSSCFEISVTQHDILRDLALILSKRGSIHEHRRLVMPKREENGLLPREWSRCKDQPFEAQIVSINTGEMTEMDWFELDFPKAEVLIINFASSDYFLPPFMNRMPNLRALIIINYSTSYARLHNVSVFRNLTNLRSLWLEKVSIPQLSGTVLKNLGKLFIVLCKINNSLDGKGFPNLSELTLDHCDDLTHIPSSICGMKSLQNLSLTNCHNLTQLPDEFGKLRSLEILRLYACPNLETLPTSMCDMKRLKYIDISQCVNLTCFPNEIGRLVSLEKIDMRECPMIRYLPKSAVSLQSLQLVICDEEVYGMWRDVEMAKPNLHIQVSEQYFDLDWLQE 822
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cca05g00216 822 Pfam Arabidopsis broad-spectrum mildew resistance protein RPW8 9 133 IPR008808 -
Cca05g00216 822 Pfam NB-ARC domain 192 414 IPR002182 GO:0043531
Cca05g00216 822 Gene3D - 175 323 IPR027417 -
Cca05g00216 822 PRINTS Disease resistance protein signature 207 222 - -
Cca05g00216 822 PRINTS Disease resistance protein signature 282 296 - -
Cca05g00216 822 PRINTS Disease resistance protein signature 369 383 - -
Cca05g00216 822 PRINTS Disease resistance protein signature 730 746 - -
Cca05g00216 822 PANTHER NB-ARC DOMAIN DISEASE RESISTANCE PROTEIN 3 819 - -
Cca05g00216 822 ProSiteProfiles RPW8 domain profile. 1 149 IPR008808 -
Cca05g00216 822 SUPERFAMILY RNI-like 567 785 - -
Cca05g00216 822 Gene3D - 333 412 IPR042197 -
Cca05g00216 822 Gene3D - 414 505 IPR036388 -
Cca05g00216 822 Gene3D Ribonuclease Inhibitor 547 800 IPR032675 -
Cca05g00216 822 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 182 434 IPR027417 -
Cca05g00216 822 PANTHER LEUCINE-RICH REPEAT-CONTAINING PROTEIN 3 819 IPR044974 GO:0006952
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Cca05g00216 Cca-Chr5 4603693 4608454 Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Cca05g00216 615 817 Receptor kinase-like Gene Family AT1G75820 27.083 2.90e-07 52.4
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Cca05g00216 05 4603693 4608454 Cca05g00216 05 4603693 4608454 ECH