Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cca05g00215 ATGGCTCTGAACGATTTCTTCGCGGGGGAGATCGCGGCGGAGCTGGTGAAGATGCTGATCAGCATCTCCCGGAAGTCGCTCCTCTGCCGCGCCAGCGCCGACCAGCTGATCGCGTACATGAACGAGCTGCTGCCGACGATCGAGGAGATAAAATATTCGGGCGTGGAGGTTCCCGCCCAGCGGCAGTCCCAGCTGGACCGCCTCTCGGAGCTCCTCCGCTCCGGCGTGCTCCTCTCCCACAAGGTCCTCTCCTCCAGCCGCTGGAACGTCGTCTCCAAGTTCTTGATGGGCCCCATGCAGGCCCACATCTTGGCCGACGTCCACCACGTCCGCTTCGAGATGGCCGAGCGCTTCGACCGCCTCGACAACTCCTGCAGCCGCCTGGAGCACTACTTTCGGAACATGAAGATCGGCGTCGGCGGCGGGGGCTGGGTCGAGGAGGCTGTCAGGACTGTCGACCTCCACGCTGCTCACGGCGCCTCCGCCGTTGGCTTGGCTTTCGCCAAGTGTAAGGTCAGGGAGCTGGTTGTCGGAAGGGAGGATCTTTGGGTTGTTGGGATTTCTGGGATTGGTGGCTCCGGGAAGACCACTCTTGCTACAGAGGTCTGCAAAGATGATCAAGTTAGATGTTATTTCAGGGAGAGGATTTTGTTCTTGACTGTGTCGCAGTCTCCGAATGTGGAGCATTTAAGGACGAAGATTTGGGGGTATATTATGGGCAACGAGAGGTTGGATGAAAATTATGTGGTTCCGCAGCGGATGCCACAGTTTGAGTGCAGAAGTGAAACTCGAACTCTCATTGTTTTGGATGATGTGTGGACACTCTCTGTGATGGAGCAGCTTGTGTGTAGAATACCCGGTTGCAAGTTTCTTGTGGTATCCAGGTTTAAGTTCCAAACGGTGTTAAGTTATGAAGTGGAATTGCTGAGTGAAGAGGATGCCTTGTCTTTGTTCTGTCATCATGCTTTTGGACACAAATCAATTCCTTTATCTGCTGATGAGAATTTGGTCAAGCAGGTTGTGACTGAGTGTAGAAGGCTTCCTTTGGCTCTTAAGGTGATTGGGGCTTCTTTGAGGGATCAGACTGAGATGTTTTGGATGAGTGTTAAAAACAGGCTTTCTCAGGGACAAAGTATTGGTGAATCCCATCAAAACAATCTGATTGAAAGAATGGCAATTAGTATCAACTACCTGCCAGAGATGATCAAGGAGTGCTTCTTGGACTTGTGTTCATTTCCTGAGGATAAAAAAATTCCTCTGGATGTTCTCATCAATATGTGGGTTGAAATCCATGATATTCCTGAAACAGAAGCTTATGCAATTGTTGTTGAGCTCTCCAACAAAAATCTCCTCACCTTGATGAAAGAGGCACGCGCAGGAGGCATGTATAGTAGTTGCTTTGAGATCTCAGTTACTCAACATGATGTGCTGAGAGACTTGGCCCTCAATTTGAGCAACCGTGCGAGCACCAACGAACGCCGGCGATTAGTTATGCCAAAACGAGAGAATGGAATTCCTAGAGAGTGGTTGAGATTCAAACACAGGCCTCTTGAGGCTCAGATTGTTTCAATTCACACAGGTGAAATGAAGGAAGAAGACTGGTGTAATCTGGAATTTCCAAAGGCTGAAGTGTTGATTATCAATTTCACATCCACTGAGTACTTCTTACCTCCCTTCATTGATAGAATGCCAAATTTGAGGGCATTGATAATAATAAACTACAGTGCAACATATGCTTGCCTACACAATGTGTCAGTTTTCAAGAATTTGTCCAACTTGAGAAGCCTCTGGCTTGAAAAAGTTTTCACCCCCGAGTTATCAGGCATTGCCATGAAAAGCTTGGGGAAACTATTTATTGTCCTGTGCAAGATGAATAACAGTTTGGAGGGAAAAGAGGCAGATTTGGCCCAAGCCTTTCCTAATCTCTTTGAGCTCACACTTGATCACTGTGATGATCTAACTCAATTGCCCTCAAGCATATGTGGAATGAAGTCCCTCCAAAACTTGAGTCTCACCAACTGCCACAATTTGACTCAATTGCCTGTTGAATTAGGCAAACTAAGATCCCTAGAGATCCTTCGTTTATATGCTTGTCCTGATCTGAAAACACTTCCTCCTAGCATGTGTGACATGGTGAGATTGAAGTATATTGACATTTCTCAGTGTGTTAACCTGACATGCTTCCCTGAAGAGATTGGTAGACTGGTAAGCTTGGAGAAAATTGACATGCGGGAATGCTGCATGATTAGAAATGTGCCAAAGTCTGCATTGTCATTGCAGTCTCTAAGGCTTGTAATTTGTGATGAGGAGGTATCTGGGATTTGGAAAGAGGTTGAGAAGGCTAAGCCTAAAGTGCATATTCAAGTATCAGAGCAGTACTTTGATTTGGACTGGCTTAAAGAGTGA 2406 0.473 MALNDFFAGEIAAELVKMLISISRKSLLCRASADQLIAYMNELLPTIEEIKYSGVEVPAQRQSQLDRLSELLRSGVLLSHKVLSSSRWNVVSKFLMGPMQAHILADVHHVRFEMAERFDRLDNSCSRLEHYFRNMKIGVGGGGWVEEAVRTVDLHAAHGASAVGLAFAKCKVRELVVGREDLWVVGISGIGGSGKTTLATEVCKDDQVRCYFRERILFLTVSQSPNVEHLRTKIWGYIMGNERLDENYVVPQRMPQFECRSETRTLIVLDDVWTLSVMEQLVCRIPGCKFLVVSRFKFQTVLSYEVELLSEEDALSLFCHHAFGHKSIPLSADENLVKQVVTECRRLPLALKVIGASLRDQTEMFWMSVKNRLSQGQSIGESHQNNLIERMAISINYLPEMIKECFLDLCSFPEDKKIPLDVLINMWVEIHDIPETEAYAIVVELSNKNLLTLMKEARAGGMYSSCFEISVTQHDVLRDLALNLSNRASTNERRRLVMPKRENGIPREWLRFKHRPLEAQIVSIHTGEMKEEDWCNLEFPKAEVLIINFTSTEYFLPPFIDRMPNLRALIIINYSATYACLHNVSVFKNLSNLRSLWLEKVFTPELSGIAMKSLGKLFIVLCKMNNSLEGKEADLAQAFPNLFELTLDHCDDLTQLPSSICGMKSLQNLSLTNCHNLTQLPVELGKLRSLEILRLYACPDLKTLPPSMCDMVRLKYIDISQCVNLTCFPEEIGRLVSLEKIDMRECCMIRNVPKSALSLQSLRLVICDEEVSGIWKEVEKAKPKVHIQVSEQYFDLDWLKE 801
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cca05g00215 801 Gene3D Ribonuclease Inhibitor 513 786 IPR032675 -
Cca05g00215 801 Pfam NB-ARC domain 180 395 IPR002182 GO:0043531
Cca05g00215 801 Gene3D - 159 303 IPR027417 -
Cca05g00215 801 SUPERFAMILY RNI-like 539 765 - -
Cca05g00215 801 PANTHER NB-ARC DOMAIN DISEASE RESISTANCE PROTEIN 3 798 - -
Cca05g00215 801 Gene3D - 308 393 IPR042197 -
Cca05g00215 801 PANTHER LEUCINE-RICH REPEAT-CONTAINING PROTEIN 3 798 IPR044974 GO:0006952
Cca05g00215 801 ProSiteProfiles RPW8 domain profile. 1 149 IPR008808 -
Cca05g00215 801 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 175 409 IPR027417 -
Cca05g00215 801 Gene3D - 394 480 IPR036388 -
Cca05g00215 801 PRINTS Disease resistance protein signature 344 358 - -
Cca05g00215 801 PRINTS Disease resistance protein signature 259 273 - -
Cca05g00215 801 PRINTS Disease resistance protein signature 184 199 - -
Cca05g00215 801 PRINTS Disease resistance protein signature 661 677 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Cca05g00215 Cca-Chr5 4598019 4601591 Wgd