Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cca05g00212 ATGCCTCTTTCTCGCAAACCGCTTTCTCCTTCGCCGCCGTCCACCGGAACCATGCAATTCCACGGCGACGGAAGAGCCGGTGATTTTGTTCCGGCGCGGCGGTTGACCAGGCAGAGGAAGCTCCGCTACCTCAGCGACCTAGACATTGGCTTCTCTGCTGAGTTTTCTTCTTTTGCGGCTTCGCCGGAGTGTCGCTCCCACGGCTTTTCCGGCCACCGCTCCTTCTCTGCTGCGCCGCAACTGCTGCTGCCTCCCATGTCGCCGTTGACCAGTCGAGCCAAGTCAATCAACTCCACTTCCGTACATCCTAGCCTCTCATCATCGTTAGAACATCACCACATTGCTTCTTCTGTTTCCAGGAACGCAGTGCATCATGATGCAGTGACCCCTACAAGTTCTACACGCAATTTAAATAGATCTTCCTTGGATTCTACTCTTGCAAATTCAAAATGCAATTTGAGAGAGCATATTGCTGCAGCAAATTTCTTGACAGAAAGGGTGCACCATTATAGATGCTCTTATGTTGCTGTTGTTAATTCTGGCAATATTTCATGGAAAACCACCAGACAAGTCTCTCACGATGAAGGTATTTCCCACTTGAATTTGGGTGTTGCTGCCATACCCAAGAGTGCACCAACAAGTGTAGTCACTTGTCCTAATACTAGTCCATGTAAATCAAGCAATGTAGATTTCTCTGAAGTTAGTGACAATTTGAAAATGTTATCAGCTAAAACTGTTCATAATCCAGACCATTCTCCTCTTAATTGCCCTATGAGTCTCACTTGTTACTTCAATCCTAAAATTGAGGAGGAAGCTCAGCACCATAAATCTTTGTCCAGGGTGTGCCCAGAAAATAACCTGGTTGATGCACACCCCTTACCTCTTCCTCCTAGAGTTTCGTCATCAGCACCGTTATCTATGGCTATGTTGCATCAATCAAGTTCCATGCATCATGCTACTGAAAATCTGCCTTCAGTGAAAGGTCAATGGCAGAAAAGAAAACTTATTGGACGTGGTACCTTTGGAAGTGTTTTTCATGCAACCAACCTAGAAACTGGAGGGTCGTGTGCAATGAAGGAGGTCAATTTAATTCCTGATGATCCTTCTTCTGCTGAGTGCATAAAACAACTGGAGCAGGAAATCAAAATTCTCCGTCAACTACACCACCCCAACATTGTGCAGTATTATGGAAGTGAAACAGTTGGCGATCATTTGTACATATATATGGAGTATGTCCATCCAGGGTCAATCAGTAAATTTATGCGTGAACATTGTGGAGCTATGACAGAATCTGTGGTTCGCAACTTTACGAGGCATATTCTCTCTGGATTAGCTTACTTACATAGTAACAAAACCATCCACAGAGATATCAAAGGTGCAAACTTGCTGGTCAATAAATCAGGCATTGTCAAGCTTGCAGATTTTGGGCTGGCAAAAATTCTAATGGGGAATTCATATGATCTTTCTCTAAAGGGTAGTCCTTATTGGATGGCTCCAGAGGTGGTGAAAGGTGGCATAAAGAATGAATCTAATCCTGATGTTGTCAAGGCCATTGATATATGGAGCTTAGGGTGCACGATTATAGAAATGTTGACAGGAAAACCTCCTTGGAGTGAAGTTGAAGGGCCTTCAGCCATGTTCAAGGTACTGCAAAATTCCCCACCTATACCTGAAACTTTATCTTCAGTGGGAAAGGATTTCCTCCAGCAATGTTTCCAAAGGGACCCTGCTGATCGACCATCTGCAGCAACTCTTCTTAAGCATGCTTTTGTGCAGAATTTGCATGATCAAGATATTCTAGTTCATCCAAAATCATATCCTAGAGGAAACCTAGGACCAGAAGGTAATTCAGCTGGTGATAGAGACACAACAAAAAATAGATGTCGCATGATGCAAGCCTCCATTAGCGCACAGATTTTTAACAAAATTCAGAAATTAATCGGCGATACTTCCGAACAAAGCAATGCCAATGTTAAGGAATCTCATAATGTTATACCTTGTCGTTAA 2007 0.4365 MPLSRKPLSPSPPSTGTMQFHGDGRAGDFVPARRLTRQRKLRYLSDLDIGFSAEFSSFAASPECRSHGFSGHRSFSAAPQLLLPPMSPLTSRAKSINSTSVHPSLSSSLEHHHIASSVSRNAVHHDAVTPTSSTRNLNRSSLDSTLANSKCNLREHIAAANFLTERVHHYRCSYVAVVNSGNISWKTTRQVSHDEGISHLNLGVAAIPKSAPTSVVTCPNTSPCKSSNVDFSEVSDNLKMLSAKTVHNPDHSPLNCPMSLTCYFNPKIEEEAQHHKSLSRVCPENNLVDAHPLPLPPRVSSSAPLSMAMLHQSSSMHHATENLPSVKGQWQKRKLIGRGTFGSVFHATNLETGGSCAMKEVNLIPDDPSSAECIKQLEQEIKILRQLHHPNIVQYYGSETVGDHLYIYMEYVHPGSISKFMREHCGAMTESVVRNFTRHILSGLAYLHSNKTIHRDIKGANLLVNKSGIVKLADFGLAKILMGNSYDLSLKGSPYWMAPEVVKGGIKNESNPDVVKAIDIWSLGCTIIEMLTGKPPWSEVEGPSAMFKVLQNSPPIPETLSSVGKDFLQQCFQRDPADRPSAATLLKHAFVQNLHDQDILVHPKSYPRGNLGPEGNSAGDRDTTKNRCRMMQASISAQIFNKIQKLIGDTSEQSNANVKESHNVIPCR 668
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cca05g00212 668 ProSiteProfiles Protein kinase domain profile. 330 591 IPR000719 GO:0004672|GO:0005524|GO:0006468
Cca05g00212 668 MobiDBLite consensus disorder prediction 122 141 - -
Cca05g00212 668 ProSitePatterns Protein kinases ATP-binding region signature. 336 359 IPR017441 GO:0005524
Cca05g00212 668 SUPERFAMILY Protein kinase-like (PK-like) 307 609 IPR011009 -
Cca05g00212 668 Pfam Protein kinase domain 331 590 IPR000719 GO:0004672|GO:0005524|GO:0006468
Cca05g00212 668 Gene3D Transferase(Phosphotransferase) domain 1 320 664 - -
Cca05g00212 668 MobiDBLite consensus disorder prediction 1 26 - -
Cca05g00212 668 MobiDBLite consensus disorder prediction 116 141 - -
Cca05g00212 668 SMART serkin_6 330 591 IPR000719 GO:0004672|GO:0005524|GO:0006468
Cca05g00212 668 PANTHER MAP KINASE KINASE KINASE SSK2-RELATED-RELATED 26 661 - -
Cca05g00212 668 PANTHER MITOGEN-ACTIVATED PROTEIN KINASE KINASE KINASE YODA 26 661 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Cca05g00212 Cca-Chr5 4552920 4558781 Dispersed/Wgd
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK STE_STE11 Cca05g00212 Pkinase 2.8e-68 CL0016
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Cca05g00212 05 4552920 4558781 Cca07g00417 07 5523127 5529235 PCT