Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cca05g00211 ATGAAACCAAGTTCTTCATCCTCCCCACGACCcaacaacaacaacaacaacaaTTGTTACAGAATAAAAGGCCCATGGAGCGCGGAAGAGGATCGGATCCTGACCTGGCTGGTGGAAGCCCATGGGCCGAGGAACTGGGCCTTGATAAGCCGTCACATAAAGGGCCGGTCGGCGAAGTCGTGCAGGCTTCGATGGTGCAACCAGCTGAGTCCCGCGGTGGAGCACCGACCCTTCTCCACGCGCGAGGACGAGGTTATACTCCACGCGCACGCGCGCTTCGGGAACAAGTGGGCCACAATCGCCAGGCTTCTTCCGGGCCGAACCGACAATGCCGTTAAGAACCATTGGAACGCCACGCTCAAGCGGAGGGCCCCCCAACGGCGTCGTTTTGCCACGGAGCGCTTCGAGGACGACACGTTTACTGCGTTGACTCTGGCACCGCCGGGGAGTTTCGGGCCCTAA 462 0.5823 MKPSSSSSPRPNNNNNNNCYRIKGPWSAEEDRILTWLVEAHGPRNWALISRHIKGRSAKSCRLRWCNQLSPAVEHRPFSTREDEVILHAHARFGNKWATIARLLPGRTDNAVKNHWNATLKRRAPQRRRFATERFEDDTFTALTLAPPGSFGP 153
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cca05g00211 153 CDD SANT 77 120 IPR001005 -
Cca05g00211 153 MobiDBLite consensus disorder prediction 1 20 - -
Cca05g00211 153 ProSiteProfiles Myb-like domain profile. 70 120 IPR001005 -
Cca05g00211 153 SMART sant 22 71 IPR001005 -
Cca05g00211 153 SMART sant 74 122 IPR001005 -
Cca05g00211 153 PANTHER MYB PROTEIN-RELATED 4 129 - -
Cca05g00211 153 PANTHER TRANSCRIPTION FACTOR MYB44-LIKE 4 129 - -
Cca05g00211 153 ProSiteProfiles Myb-type HTH DNA-binding domain profile. 75 124 IPR017930 -
Cca05g00211 153 ProSiteProfiles Myb-type HTH DNA-binding domain profile. 23 73 IPR017930 -
Cca05g00211 153 ProSiteProfiles Myb-like domain profile. 23 69 IPR001005 -
Cca05g00211 153 CDD SANT 25 67 IPR001005 -
Cca05g00211 153 Gene3D - 76 139 - -
Cca05g00211 153 Pfam Myb-like DNA-binding domain 26 83 - -
Cca05g00211 153 SUPERFAMILY Homeodomain-like 21 116 IPR009057 -
Cca05g00211 153 Gene3D - 22 74 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Cca05g00211 Cca-Chr5 4541825 4542715 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Cca05g00211 18 123 MYB Transcription Factor Family AT4G37260 75.472 6.08e-56 176
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF MYB Cca05g00211 Myb_DNA-bind_6 3.7e-15 CL0123
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Cca05g00211 05 4541825 4542715 Cca05g00211 05 4541825 4542715 ECH
Cca05g00211 05 4541825 4542715 Cca07g00420 07 5558715 5560812 PCT