Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cca05g00209 ATGATGAAGGGAAGCTTGAGAGTTGCAAATAAAAGTGGAAAAGCTTCTAGCAGAGAAAGAAAATTGGCTTTGCAACAAGATGTGGATAGGTTGAAGAAGAAGCTTAGGCATGAGGAGAACATCCACAGGGCATTGGAGAGGGCTTTCAATAGACCCTTGGGAGCTTTGCCTCGTCTTCCTCCTTATCTCCCTCCCTATATACTAGCCCTTCTGGCTGAAGTGGCAGTTCTGGAAGAGGAAATTGTGAGGCTTGAAGAGAAGGTTGTGCATTTCAGACAGGATTTGTACCAGGAAGCTGTCTACATGTCATCTTCAATGAGGAAACTGCAACATTCAGTTTCACCTTCTCCAGACAAGTCAAATACAACAATGGATAGTCCCAAGTTGGATAAATTAAAGTCTCAATCTGGTAATTCAGCAACAACATCTGCAACTAGGTCTACCACAACACTCACTGAGGATAGACAAGGGAAAGACAATCAATCCTGTAGTAATTCTTCCAAGAGCAGGCAGCAATCCTCCAACCAAATTAAAAAAACTCCAATTAAGAATATTCATTTTGACAATAAATCACTGCAGAAAAGATGGGATCATCCTAAAAGGAAGCAAGAACCAAGGGTGAACAACCAGCAAATTGCAGATGTAAGAAGTCATAGTGCACATAAAAATTCATCAGAGGCTGAGAGTCCAAATATAATTTCAGAAAATATTGTAAAGTGCTTATCAAACATTCTCTTGAGAATGAGTGCTGTGAAGAATCCAGGTTCTGCAAGTGACATACGACCCTTGTGGGATCTAAAACCTCAAAACTGTGATGAAGGAGCAGATTTTGGGGATCCATATGGCATCTGGTTGGAATTTGGAAAGAGGGATATTGGTCCATACAAGCAACTATGTGCAATTGATGCTAAATCTTTCAATCCAAAACGAACTGCAAATACTTTGTTTTTACTACATCGGTTGAAACTTCTTTTAAGGAAACTAGCCTCTGTCGACTTGGAAAACCTCAATCATCAGGAGAAGCTCGCATTCTGGATCAACATCTACAACTCGTGTATGATGAATACATTCATAGAGAATGGCATACAAGAGAGTCCTGAAATGGCTGTTGCACTTATGAGGAAGGCAACAATAAATGTGGGTGGACACGTGCTAAGTGCAACAACCATAGAGCATTTCATTTTAAGACTTCCTTATCACTGGAGATTTACGTTTTCCAAGGGAACAAAAAATCATGAAATGACAGCAAGAAGTATGTATGGACTGGAGCTGTCAGAACCCTTAGTCACATTTGCTCTCTCTTGTGGAACTTGGTCTTCTCCTGCTGTGAGAGTTTACACAGCATCCCAGGTTGAGAATGAACTGGAAGTGGCCAAAAGAGAGTACTTACAGGCAGCAGTTGGAATTTCAGCTTCAAAGTTTGCTATCCCAAAGCTGCTGGATTGGTATTTACTGAACTTTGCAAAAGACTTGGAATCATTGCTGGATTGGATCTGTCTCCAGTTACCAAGTGAACTGGGTAAAGAAGCCATTAAATTCCTTGAGGAAAGAAAAACTGAGTCCCTCTCACAATTTGTGCAAATTATGCCATATGAGTTCAACTTTAGATATTTGATATGCACATAA 1626 0.4034 MMKGSLRVANKSGKASSRERKLALQQDVDRLKKKLRHEENIHRALERAFNRPLGALPRLPPYLPPYILALLAEVAVLEEEIVRLEEKVVHFRQDLYQEAVYMSSSMRKLQHSVSPSPDKSNTTMDSPKLDKLKSQSGNSATTSATRSTTTLTEDRQGKDNQSCSNSSKSRQQSSNQIKKTPIKNIHFDNKSLQKRWDHPKRKQEPRVNNQQIADVRSHSAHKNSSEAESPNIISENIVKCLSNILLRMSAVKNPGSASDIRPLWDLKPQNCDEGADFGDPYGIWLEFGKRDIGPYKQLCAIDAKSFNPKRTANTLFLLHRLKLLLRKLASVDLENLNHQEKLAFWINIYNSCMMNTFIENGIQESPEMAVALMRKATINVGGHVLSATTIEHFILRLPYHWRFTFSKGTKNHEMTARSMYGLELSEPLVTFALSCGTWSSPAVRVYTASQVENELEVAKREYLQAAVGISASKFAIPKLLDWYLLNFAKDLESLLDWICLQLPSELGKEAIKFLEERKTESLSQFVQIMPYEFNFRYLICT 541
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cca05g00209 541 PANTHER EXPRESSED PROTEIN 3 540 - -
Cca05g00209 541 MobiDBLite consensus disorder prediction 1 20 - -
Cca05g00209 541 MobiDBLite consensus disorder prediction 105 182 - -
Cca05g00209 541 Pfam Protein of unknown function, DUF547 334 463 IPR006869 -
Cca05g00209 541 MobiDBLite consensus disorder prediction 183 207 - -
Cca05g00209 541 MobiDBLite consensus disorder prediction 105 229 - -
Cca05g00209 541 MobiDBLite consensus disorder prediction 208 229 - -
Cca05g00209 541 Coils Coil 14 48 - -
Cca05g00209 541 Coils Coil 67 94 - -
Cca05g00209 541 PANTHER TRANSCRIPTION FACTOR 3 540 - -
Cca05g00209 541 Pfam Leucine-zipper of ternary complex factor MIP1 17 98 IPR025757 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Cca05g00209 Cca-Chr5 4496051 4500290 Dispersed/Wgd
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Cca05g00209 05 4496051 4500290 Cca05g00209 05 4496051 4500290 ECH
Cca05g00209 05 4496051 4500290 Cca07g00424 07 5617307 5621404 PCT