Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cca05g00208 ATGAGGCTAACAATGTTATCAACAAAATTGCTTTTGTGGTTCCTGTTTTTGTCTTGGTGCCACTTTGCCATCTCATGTGAGGCCAACCAAGAGGGTGAATACCTCTACAGGTTCATTCGATCAAGGAGATCTAAGAAAGGTTCATATGGAGAGGCTTCAATGGCGACAAGTGGCCACGACCGACATTATTCGAAGGTTTATGTTGTTGAGGAACAAAGTGGGTTGAGGGAAGGTGACAAAGTGAAGGCTTTGCCGGGACAACCACAAGGGGTGGATTTTGATCAATATGCTGGCTATGTGACTGTGGATGCAAAAGCAGGGAGAGCACTATTCTACTACTTTGTGGAGTCACCTAACAACTCCTCCAACAAGCCTCTTGTTCTATGGCTAAATGGAGGGCCTGGCTGCTCTTCCTTTGGGTATGGAGCCATGCAAGAACTGGGACCTTTCAGAGTCAACAGCGATGGAAAAACACTTCACAGAAATCAATATGCATGGAACAATATGGCAAACGTTATTTTCCTAGAGTCTCCAGCAGGAGTTGGTTTTTCATATTCAAACACTTCTTCTGACTACCCTAATACCGGTGACAAGAGCACAGCCATGGACTCTTACACTTTTCTTCTAAATTGGCTTGAGAGATTTCCACAGTACAAAACTCGAGACTTGTTCATCACTGGAGAAAGCTATGCTGGACATTATGTCCCTCAGCTAGCTGACACTATTCTCACTAATAATAAGCTTACCAATCACACAGTGATCAACCTAAAAGGGGTTGCGATTGGGAATGGGTGGATAGATGATAGTATGTGTGCAAAGGGAATGTATGACTATTTCTGGACACATGCTCTGAACTCTGATGAAACACATGAAGGAATTCAAAGACATTGTGACTTTGAGAGTGGTAACTTAACAAATGAATGCAGCAAATATCAAAATAGTGGGGATGATGAAGTTGGAAACATTAACATATATGACATATATGCTCCTCCTTGCGATTCAGCAGCAGCAAAAGCTGGTGCCAGTCCTGCCACTAACTCTGACAGTAGTTTGGACCCTTGTTCTGACGATTATACCAACACCTACTTAAATCTCGCTGAAGTACAAGAGGCTCTTCATGCTAAAGCCACAGAATGGTCTCCTTGCAGAGGGGTGGGATGGACAGATAGCCCAGCAACAATTCTACCCACTATAAATCGGTTAATATCAAGTGGCATAAACACTTGGATTTATAGTGGCGATACAGATGGGCGTGTTCCCATAACATCATCTAGGTATTCAGTAAATGCCTTGAAACTCCCAGTGGTGACAACATGGCGTCCATGGTACTCTGGCAATGAGGTTGGAGGATACTTGGTTGTGTACAAAGGGCTCACACTCGTCACTGTAAGAGGAGCAGGGCACATGGTTCCAAGTAACCAACCACAGCGAGCGCTAACCATGATCTCATTTTTCCTTCGTGGAGAACTTCCTCCTAAATAA 1482 0.4386 MRLTMLSTKLLLWFLFLSWCHFAISCEANQEGEYLYRFIRSRRSKKGSYGEASMATSGHDRHYSKVYVVEEQSGLREGDKVKALPGQPQGVDFDQYAGYVTVDAKAGRALFYYFVESPNNSSNKPLVLWLNGGPGCSSFGYGAMQELGPFRVNSDGKTLHRNQYAWNNMANVIFLESPAGVGFSYSNTSSDYPNTGDKSTAMDSYTFLLNWLERFPQYKTRDLFITGESYAGHYVPQLADTILTNNKLTNHTVINLKGVAIGNGWIDDSMCAKGMYDYFWTHALNSDETHEGIQRHCDFESGNLTNECSKYQNSGDDEVGNINIYDIYAPPCDSAAAKAGASPATNSDSSLDPCSDDYTNTYLNLAEVQEALHAKATEWSPCRGVGWTDSPATILPTINRLISSGINTWIYSGDTDGRVPITSSRYSVNALKLPVVTTWRPWYSGNEVGGYLVVYKGLTLVTVRGAGHMVPSNQPQRALTMISFFLRGELPPK 493
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cca05g00208 493 PRINTS Carboxypeptidase C serine protease (S10) family signature 162 174 IPR001563 GO:0004185|GO:0006508
Cca05g00208 493 PRINTS Carboxypeptidase C serine protease (S10) family signature 175 185 IPR001563 GO:0004185|GO:0006508
Cca05g00208 493 PRINTS Carboxypeptidase C serine protease (S10) family signature 211 236 IPR001563 GO:0004185|GO:0006508
Cca05g00208 493 PRINTS Carboxypeptidase C serine protease (S10) family signature 458 471 IPR001563 GO:0004185|GO:0006508
Cca05g00208 493 Gene3D - 394 488 - -
Cca05g00208 493 ProSiteProfiles Prokaryotic membrane lipoprotein lipid attachment site profile. 1 26 - -
Cca05g00208 493 ProSitePatterns Serine carboxypeptidases, histidine active site. 458 475 IPR033124 GO:0004185
Cca05g00208 493 Gene3D alpha/beta hydrolase 74 342 IPR029058 -
Cca05g00208 493 Pfam Serine carboxypeptidase 85 487 IPR001563 GO:0004185|GO:0006508
Cca05g00208 493 SUPERFAMILY alpha/beta-Hydrolases 81 489 IPR029058 -
Cca05g00208 493 ProSitePatterns Serine carboxypeptidases, serine active site. 225 232 IPR018202 GO:0004185
Cca05g00208 493 PANTHER SERINE PROTEASE FAMILY S10 SERINE CARBOXYPEPTIDASE 35 490 IPR001563 GO:0004185|GO:0006508
Cca05g00208 493 PANTHER CARBOXYPEPTIDASE 35 490 - -
Cca05g00208 493 Gene3D - 354 385 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Cca05g00208 Cca-Chr5 4466492 4474429 Dispersed/Transposed
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Cca05g00208 05 4466492 4474429 Cca05g00208 05 4466492 4474429 ECH