Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cca05g00201 ATGGATCAAACAACAAAAGTTTCTGTAGCTCCAACTCCATGTGATGATGAAGGACACCTAGTTACAGTGCTTAGTATTGATGGGGGTGGCATTCGAGGAATCATTCCAGGAATCATACTTGGTTTCCTCGAATCAGAACTTCAGAAGCTGGATGGTGATGATGTAAGATTGACAGACTATTTTGATGTGATTGCGGGAACAAGCACAGGTGGATTAGTCACAACAATGCTTACTGCTCCAAATCAAAATAATCGACCCTTGTATGCAGCCAAAGATATTAAGAATTTCTTCCTTGAACACAGTCCAAAAATCTTCCCACAAAATAAAACTTTATTCTCATTTATGGTGAAGTTGTTCAGAACTCTCTTTGGCCCACAGTACAACGGCAAGTATTTACACAGAATTCTGAGGGAAAAACTAGGAGACACAAAATTGAACCAAACATTGACCAATGTGATCATCCCAACATTTGATATCAAGCGCCTTCAACCAACCATTTTTTCCAACTTCCAGCTGAAGGAGAGGCCAGATTTGAATGCGTTGTTATCAGATATATGCATTTCAACCTCGGCAGCTCCAACATATCTTCCAGCTCATTCCTTTGAAACCAAAACCCAACATGGTCATGTCATAGGCAAATTCGATCTTATAGACGGTGGTGTCGCTGCAAATAACCCGACTCTGGTAGCCATGGCAGAAGTGACGAACCAGATTTGGCACGAAGGTTCATGTGCAAACTTAAATGTGGAAGCGATGCAATACGATAGATTTTTGGTGATATCATTGGGAACAGGTTCTCAGAAACAGGAGATGAAATACAGTGCAGATGAAGCAGCAGGATGGGGTGTATTGAGTTGGGTCACCACAACCAATGGTTGCACTCCTTTAATTGATGCCTTTAGTCAAGCCAGTGTTGACATGGTTGACTTTCACATTTCTTCCCTTCTTCGAGCACTCAATTCTCAACATAACTACCTCCGAATCCAGGACGATACATTAACTGGGGACTTGAGTTCAGTAGACTTGGCCACGGAGAAGAATTTGAATGATCTCGTCAAAGTTGGAGAAGCATTGTTAAAGAAACCAGTTTCAATGATTAACTTGAAGACTGGTGTCTATGAACCTGCTAAATCCAATGAAACAAATGAAGAAGCCTTGACGAGGTTTGCGGAACGACTATCCAAACAGAAGCGATTTCGTAAATCTCAAATGTCTGCCAATGGAAATCATTAA 1233 0.412 MDQTTKVSVAPTPCDDEGHLVTVLSIDGGGIRGIIPGIILGFLESELQKLDGDDVRLTDYFDVIAGTSTGGLVTTMLTAPNQNNRPLYAAKDIKNFFLEHSPKIFPQNKTLFSFMVKLFRTLFGPQYNGKYLHRILREKLGDTKLNQTLTNVIIPTFDIKRLQPTIFSNFQLKERPDLNALLSDICISTSAAPTYLPAHSFETKTQHGHVIGKFDLIDGGVAANNPTLVAMAEVTNQIWHEGSCANLNVEAMQYDRFLVISLGTGSQKQEMKYSADEAAGWGVLSWVTTTNGCTPLIDAFSQASVDMVDFHISSLLRALNSQHNYLRIQDDTLTGDLSSVDLATEKNLNDLVKVGEALLKKPVSMINLKTGVYEPAKSNETNEEALTRFAERLSKQKRFRKSQMSANGNH 410
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cca05g00201 410 SUPERFAMILY FabD/lysophospholipase-like 21 372 IPR016035 -
Cca05g00201 410 PANTHER XYLOSE ISOMERASE 9 405 - -
Cca05g00201 410 PANTHER PATATIN 9 405 - -
Cca05g00201 410 ProSiteProfiles Patatin-like phospholipase (PNPLA) domain profile. 24 231 IPR002641 GO:0006629
Cca05g00201 410 Pfam Patatin-like phospholipase 24 231 IPR002641 GO:0006629
Cca05g00201 410 Gene3D Cytosolic phospholipase A2 catalytic domain 12 406 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Cca05g00201 Cca-Chr5 4351331 4355074 Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Cca05g00201 18 400 Miscellaneous Gene Families AT2G26560 62.402 1.23e-169 479
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Cca05g00201 05 4351331 4355074 Cca05g00201 05 4351331 4355074 ECH