Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cca05g00199 ATGGAGAGAACTCAGTCATCCATTGAACAAATTCAGCCTCCAACTTATGGAAACTTAGTAACCATTCTTAGCATCGATGGGGGTGGTATTAGGGGCATCATCCCCGCTACCATTATTGCTTTCCTTGAATCTCAGCTTCAGGAGTTGGATGGTGAAGATGCAAGGCTTGCAGACTACTTTGATGTGATATCAGGAACAAGCACGGGTGGTCTTGTAACTGCTATGTTAACTGCTCCAGACAACAACAATCGACCACTTTTTTCTGCCAAAGAAATCAAACCTTTTTACATGGAACACTGTCCAAAAATTTTCCCACAGCATAGTGGGATCGGTGGGACGATGTTAGCAAAGTTAATGAGGTCTATGGGAGGACCCAAATACGACGGGAAATACCTGCATGGGGTCGTGAGAGACAAACTCGGAGACATTCGCTTGCATGAGACCCTCACTAACGTTGTCATTCCGACATTCGACATCAAGTGTTTGCAACCAATTATTTTCTCATCTTACCAGGTTAAGATGTCCACTGGCTTGGATGCCAAACTCTCAGACATATGTATCAGCACGTCCGCTGCACCAACTTATCTCCCTGCTCACAATTTCAGCAACCAAGATTCAAATGGGAAAGTTCACGAATTCAACCTTATTGATGGTGGCGTTTGTGCAAATAACCCCACCTTGGTTGCGATGAACGAAGTAACAAAGCAAATCATTAAGGAAAATTCTGATTTCTTTCCAATCAAGCCTATGGAATATGGTCGGTTCCTAATAATTTCAATAGGCACTGGAACAGCAAAAAATGAGGAAAAATTCAATGCACCAATGGCAGCGAAATGGGGATTATTGGATTGGCTAACTCATAGTGGTACTACTCCCTTAATTGATGTTTTCACTCAATCCAGTGCAGATATGGTTGATTTCCATTTATCTGCTGTCACTCAAGCACTTCATTCAGAAGACAATTACCTTCGAATACAGGATGACACGTTGACTGGAACGGATTCTTCTGTTGACATTGCTACAAAGGAGAACTTGGAGAAACTTTGCCAAATTGGAGAAAATCTGTTAAAGAAACCAGTCTCTAGGGTCAATTTAGAGAATGGTCTCTCTGAGCCACTCAAAAATGGGGGAACCAATGAAGATGCTCTCAAAAGGTTTGCAAAAATACTTTCACAAGAGAGGAGACTCCGTGAAATGAGATCCCCACACACTAAGAAGGCCTTCTAA 1227 0.423 MERTQSSIEQIQPPTYGNLVTILSIDGGGIRGIIPATIIAFLESQLQELDGEDARLADYFDVISGTSTGGLVTAMLTAPDNNNRPLFSAKEIKPFYMEHCPKIFPQHSGIGGTMLAKLMRSMGGPKYDGKYLHGVVRDKLGDIRLHETLTNVVIPTFDIKCLQPIIFSSYQVKMSTGLDAKLSDICISTSAAPTYLPAHNFSNQDSNGKVHEFNLIDGGVCANNPTLVAMNEVTKQIIKENSDFFPIKPMEYGRFLIISIGTGTAKNEEKFNAPMAAKWGLLDWLTHSGTTPLIDVFTQSSADMVDFHLSAVTQALHSEDNYLRIQDDTLTGTDSSVDIATKENLEKLCQIGENLLKKPVSRVNLENGLSEPLKNGGTNEDALKRFAKILSQERRLREMRSPHTKKAF 408
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cca05g00199 408 Pfam Patatin-like phospholipase 23 230 IPR002641 GO:0006629
Cca05g00199 408 PANTHER XYLOSE ISOMERASE 1 406 - -
Cca05g00199 408 PANTHER PATATIN 1 406 - -
Cca05g00199 408 ProSiteProfiles Patatin-like phospholipase (PNPLA) domain profile. 23 230 IPR002641 GO:0006629
Cca05g00199 408 SUPERFAMILY FabD/lysophospholipase-like 18 381 IPR016035 -
Cca05g00199 408 Gene3D Cytosolic phospholipase A2 catalytic domain 9 402 - -
Cca05g00199 408 CDD Pat17_isozyme_like 17 368 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Cca05g00199 Cca-Chr5 4310430 4313292 Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Cca05g00199 11 405 Miscellaneous Gene Families AT2G26560 66.582 0.0 539
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Cca05g00199 05 4310430 4313292 Cca05g00199 05 4310430 4313292 ECH