Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cca05g00187 ATGGCTGCCAGGAGGGAACACCACCAAAATGTTCCCCTTTCGGTGCTCCTGAAGCGTGAATTGGCGAATGAGAAAATTGAGAAACCTGAGATTGCTCATGGTCAAGCGTGCCAGAGCAAGAAAGGGGAGGATTTGACACTGCTCAAGACGGAATGTCAGAGGGTGGTCGGTGATGGAGTCTCTACATATTCTGTATTTGGGCTATTTGATGGACACAATGGATCTGCTGCTGCTATTTATGCCAAGGAGAATCTTCTAAATAATGTTCTAAGTGCAATTCCTTCAGATCTGAACAGAGATGAGTGGATAGCAGCATTGCCCAGGGCTTTGGTTGCTGGCTTTGTAAAAACTGATAAAGATTTTCAAGAGAAAGCCCAAAAATCTGGAACTACTGTCACCTTTGTGATAATAGATGGATGGGTTGTAACAGTTGCATCAGTTGGTGATTCTCGTTGTGTACTTGAATCTTCTGATGGTGAGATTTATTACTTGTCTGCAGATCACAGGCTAGAAACAAATGAAGAGGAGAGGGTGCGGATCACCTCTAGCGGTGGTGAAGTTGGCCGGCTAAATACAGGGGGAGGTGCAGAGGTTGGTCCTTTGAGATGTTGGCCTGGTGGCTTGTGTCTTTCACGATCTATTGGAGATATGGATATTGGTGAATTTGTTGTCCCTGTACCATATGTAAAGCAAGTGAAGTTGTCCACTGCTGGAGGCCGGCTTGTTATCTGCAGTGATGGTGTTTGGGATGCTCTACCTGCAGAAGTAGCCCTTGATTGTTGTCGTGGAATGTCAGCCGAAGCTGCTGCACCACAAATTGTTAAAGAAGCTATACAAGCAAAAGGACTTAGAGATGATACAACCTGTATCGTTGTTGATATATTACAACAGGAGAAGCCACCTGTTTCTGTGCCACATCCAAAGAAGCCAGTAAAGGGAATGCTCAAGTCCATGTTTCGGAAAAGGTCTTCTGAATCATCTTCTTATATTGACAAAGAGTACTTGGAGCCAGATGTAATAGAGGAAATGTACGAGGAAGGATCTGCCATGCTTTCAGAGAGGTTAGATACTAAGTATCCAGTCTGCAACATGTTTAAGTTGTTTATATGTGCAGTATGTCAAGTAGAGATAAAACCTGGAGAGGGTATTTCAATACACGAGGGTGCGGCCAACTCTCAAAAATTTCGTCCCTGGGACGGACCTTTCCTGTGCTCAAGTTGCCAAGAGAAGAAAGAAGCCATGGAAGGGAAAAGATCATCAGGTAGACTTAGCAGTGGAAGTGACGAATAA 1290 0.4434 MAARREHHQNVPLSVLLKRELANEKIEKPEIAHGQACQSKKGEDLTLLKTECQRVVGDGVSTYSVFGLFDGHNGSAAAIYAKENLLNNVLSAIPSDLNRDEWIAALPRALVAGFVKTDKDFQEKAQKSGTTVTFVIIDGWVVTVASVGDSRCVLESSDGEIYYLSADHRLETNEEERVRITSSGGEVGRLNTGGGAEVGPLRCWPGGLCLSRSIGDMDIGEFVVPVPYVKQVKLSTAGGRLVICSDGVWDALPAEVALDCCRGMSAEAAAPQIVKEAIQAKGLRDDTTCIVVDILQQEKPPVSVPHPKKPVKGMLKSMFRKRSSESSSYIDKEYLEPDVIEEMYEEGSAMLSERLDTKYPVCNMFKLFICAVCQVEIKPGEGISIHEGAANSQKFRPWDGPFLCSSCQEKKEAMEGKRSSGRLSSGSDE 429
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cca05g00187 429 PANTHER ALPHABET, ISOFORM E-RELATED 4 424 - -
Cca05g00187 429 SMART PP2C_SIG_2 47 294 IPR001932 -
Cca05g00187 429 SMART PP2C_4 22 292 IPR001932 -
Cca05g00187 429 CDD PP2Cc 63 294 IPR001932 -
Cca05g00187 429 PANTHER CATALYTIC/PROTEIN PHOSPHATASE TYPE 2C 4 424 - -
Cca05g00187 429 Pfam Protein phosphatase 2C 58 279 IPR001932 -
Cca05g00187 429 Gene3D - 31 300 IPR036457 -
Cca05g00187 429 ProSiteProfiles PPM-type phosphatase domain profile. 25 294 IPR001932 -
Cca05g00187 429 SUPERFAMILY PP2C-like 40 294 IPR036457 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Cca05g00187 Cca-Chr5 4214209 4218883 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Cca05g00187 1 428 PP2C-type Phosphatase Gene Family AT1G47380 78.089 0.0 709
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Cca05g00187 05 4214209 4218883 Cca05g00187 05 4214209 4218883 ECH
Cca05g00187 05 4214209 4218883 Cca07g00435 07 5764558 5768441 PCT