Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cca05g00185 ATGCAAGCAATGGGGAGGCTCGGCAGCTACATCACGCGTGGCGTGTGCACGGTGTCGGGGCCGTTCCTCCCCTTCGGTGGAGCAGTCGACATTGTTGTGGTTAAGCAGAAAGATGGGAGCTTCAAATCCTCTCCTTGGTACGTTAGGTTTGGGAAATTCCACAAGGTTTtgaaggaagaggagaaggagaaggtgaaggtCCATGTCAGTGTCAACGGTGTAGAATCTGATTTCTACATGCGTTTGAACGCTAAAGGGGAAGCTGTTTTCTTCCATGCAAAGGCACaagaagaagaagaacaagaacaagaTGGGGAATCTGTGTATGGTGGGGATGGTAAGAGGCATCTCAAGTCTAGAAGTTTTAATTTTGATTCATTAGACAAGAGAAATTCGGAGGCTAAGGTTGTGGGTAGGAGTAGTAGGTCTCGGAGAATTCTTGGCCACGTGTTTGGGTCAAGGTCTTTGAGAGGGGGAGGTGGAGATGATGATGTGAATAGGGTGGATTCGATGGAGAGTGCTGAGATTGCAGCCAAGTTGATGGAGCTGAAGTGGTCTACCAATCTCACTTGTGATCAACTGCCTAAGAGGACAAAGGGTGGTGCCTTGAACAATGGTTTGCCACCAAGGAAAATGAAGGAGGGAGATTGTTCTTCGAATGATAATGAGATGCTGTGCCTTGCAACAGGATGTGGAGATGTCCGTGTCCATGCTGAGGAGGTCTTGCATGCTGCAACTCTACTTCAACCTCAGGTTAATGGGAGGTCAGTAATGGAGGTCTCAGATTTGCATTCTCAGCAAAGAGATTGTTCCCATTCTAGTCTGTGTGATGCTGGGGATGTTGGAAGCACACTAAAGTTTCGAAAATCTAAAACTGTCAATATTGGTCAAAGAGATTGTTCAGTAAAGGTTAGTGCAAATACTCCAACGTCTGAACAGCTAGCATCCTTGAATCTGAAGGAAGGGAGGAACACAATAATCTTTAGTTACTCTACAGCTACGGGAAAGCAACAGATTGATGCTCAAATATATTTGTGGAAATGGAACACTCGAATAGTGATATCAGATGTAGATGGGACAATTACAAGGTCAGATGTTCTAGGTCAATTCATGCCTTTAGTAGGAATCGACTGGTCGCAAACAGGCGTTGCTCATTTATTCTCAGCTATTAAGGAAAATGGCTACCAGCTACTTTTTCTCAGTGCTCGTGCAATATCTCAGGCATATCACACTAGGCAGTTTTTATGCAACCTTAAGCAGGATGGGAAAGTTTTACCAGATGGTCCTGTTGTTATTTCCCCCGATGGACTTTTTCCTTCTCTATATCGAGAAGTTATCCGGAGGGCTCCTCATGAGTTCAAAATTGCATGTTTAGAGGACATCAAGGCACTTTTTCCACCAGATTGTAATCCGTTCTATGCTGGATTTGGAAATAGGGATACGGATGAAGTTAGCTACCTTAAGGTTGGAATCCCCAAAGGAAAAGTATTCATCATTAACCCCAGGGGAGAGATTGCTGTAAACCGTCGTTGTTTTGACACACAATCATATACTTCTCTGCATACCCTTGTGCATGGAATGTTCCCCTCTACAAACTCATATGAGCAGGAGGATTTTAATTCATGGAATTACTGGAAGTTACCTGCTATACATACTTGA 1659 0.428 MQAMGRLGSYITRGVCTVSGPFLPFGGAVDIVVVKQKDGSFKSSPWYVRFGKFHKVLKEEEKEKVKVHVSVNGVESDFYMRLNAKGEAVFFHAKAQEEEEQEQDGESVYGGDGKRHLKSRSFNFDSLDKRNSEAKVVGRSSRSRRILGHVFGSRSLRGGGGDDDVNRVDSMESAEIAAKLMELKWSTNLTCDQLPKRTKGGALNNGLPPRKMKEGDCSSNDNEMLCLATGCGDVRVHAEEVLHAATLLQPQVNGRSVMEVSDLHSQQRDCSHSSLCDAGDVGSTLKFRKSKTVNIGQRDCSVKVSANTPTSEQLASLNLKEGRNTIIFSYSTATGKQQIDAQIYLWKWNTRIVISDVDGTITRSDVLGQFMPLVGIDWSQTGVAHLFSAIKENGYQLLFLSARAISQAYHTRQFLCNLKQDGKVLPDGPVVISPDGLFPSLYREVIRRAPHEFKIACLEDIKALFPPDCNPFYAGFGNRDTDEVSYLKVGIPKGKVFIINPRGEIAVNRRCFDTQSYTSLHTLVHGMFPSTNSYEQEDFNSWNYWKLPAIHT 552
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cca05g00185 552 MobiDBLite consensus disorder prediction 95 114 - -
Cca05g00185 552 SUPERFAMILY HAD-like 344 497 IPR036412 -
Cca05g00185 552 Pfam LNS2 (Lipin/Ned1/Smp2) 308 529 IPR013209 -
Cca05g00185 552 Pfam lipin, N-terminal conserved region 23 102 IPR007651 -
Cca05g00185 552 SMART lns2 352 508 IPR031315 -
Cca05g00185 552 PANTHER LIPIN 292 550 IPR026058 -
Cca05g00185 552 PANTHER LIPIN 1 196 IPR026058 -
Cca05g00185 552 PANTHER GH19076P 292 550 - -
Cca05g00185 552 PANTHER GH19076P 1 196 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Cca05g00185 Cca-Chr5 4155465 4164923 Dispersed/Wgd
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Cca05g00185 05 4155465 4164923 Cca05g00185 05 4155465 4164923 ECH
Cca05g00185 05 4155465 4164923 Cca07g00437 07 5794579 5801937 PCT