Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cca05g00179 ATGAAAGCAGTATTGGAGGAACCACAACTGAAACTACGGATGCCAAGGCAGAACGCGACTAAGATTGAGGTGCCTAGCTTCTTTGTTGAAATGGGGAGAGGAATGAAGATGGGAATGGTGAACATGCATGAAGATGATGTGAGTGAATGGAGCAACCTTGGAGAAACAACCCACGTTTATTTCGAAAGGGTGTCACAATTTTTCAACTGGACAGATTTATTTCCCGAATGGATAGACGAGGAAGAAGAGAGCGATGTTCCATCATGCCCCGAGATACCAATGCCAGAATTCGCAACATATGAAGACATGGACGTGATCGTGGCCAAGTTGCCATGCAAATACCCCGAAGAAGGCTGGGGAAGGGACGTTTTCAGGTTACAAGTTCATCTTATTGCGGCGAATTTGGCAGTGAAGAAAGGGAAGAAGGATTGGAATTGGAGGTTAAAAGTGGTTTTGTGGAGCAAGTGTAGGCCAATGCTGGAGTTGTTTCGATGCGATGACTTGGTTAAGCATGAGGGTGAGTGGTGGTATTATGAGGCTGATGTGAAGAGATTGGAACAGAAGATTTCTTTGCCTGTGGGGTCCTGCAATTTGGCTCTGCCTCTATGGGAACAAGGGATCGACACGGTGTACGACACGTCGAACCTGGAAGAAAGCGTCCGAAGCGAAGCGAGAGCAAAACGCGAGGCCTACGCGACGGTGCTCCATTCCTCGGAAGGTTACGTCTGCGGCGCAATAACGCTGGCGCAGACGCTCCTCCAAAGCGGAACCAAACGCGACCTAGTCCTCCTCCTCGACAGCTCCTACTCCGCCGCGAAGCGCCGCGCGCTCGAGCTCTCCGGCTGGCAGATCCGACTCATCACCCGGATCCGAAACCCACGCGCGGAGAACGGCACCTACAACGAGTATAACTACAGCAAGTTTCGCTTGTGGCAGCTCACCGATTACCACAAAGTCATATTCATAGACGCCGACATCATCGTCCTCCGCAACCTCGACATCCTCTTCCACTTTCCTCAGATGTCCGCCACCGGCAACGACCAATCCATCTTTAACTCCGGCATCATGGTCCTTGAGCCCTCCAACTGCACCTTCGATGTTCTCATGGCGCGTCGCTACGACGTCATCTCCTACAACGGTGGTGACCAGGGATTCCTGAACGAGATGTTCGTGTGGTGGCACAGGCTTCCGCGGCGAGTGAACTTCTTGAAGAACTTCTGGGCCAACACAACACTGGAGGCGAGTGTGAAGAACGCGCTGTTCGGCGCGGAGCCTCCGAAACTGTACGCGATTCACTACCTGGGGCTGAAGCCctggcactgctacagggactacgactgcaactgggacGTAGAGGATCAGAGGGTCTACGCCAGCGACGTGGCGCACCGACGCTGGTGGAAGGTCCACGATGCCATGGACCACCGCTTGCAGAGTCTCTGCCGCTTGACCAGAAACCGAAGGACCGAGTTGAACTGGGAAAGGAGGAAGGCTCGCAAGTTGGCCTTACCTGATATGCATTGGAACATCAATGTTACCGACCCCAGGAGATCCGGCTCTCTTCTCATGGATTAG 1575 0.5181 MKAVLEEPQLKLRMPRQNATKIEVPSFFVEMGRGMKMGMVNMHEDDVSEWSNLGETTHVYFERVSQFFNWTDLFPEWIDEEEESDVPSCPEIPMPEFATYEDMDVIVAKLPCKYPEEGWGRDVFRLQVHLIAANLAVKKGKKDWNWRLKVVLWSKCRPMLELFRCDDLVKHEGEWWYYEADVKRLEQKISLPVGSCNLALPLWEQGIDTVYDTSNLEESVRSEARAKREAYATVLHSSEGYVCGAITLAQTLLQSGTKRDLVLLLDSSYSAAKRRALELSGWQIRLITRIRNPRAENGTYNEYNYSKFRLWQLTDYHKVIFIDADIIVLRNLDILFHFPQMSATGNDQSIFNSGIMVLEPSNCTFDVLMARRYDVISYNGGDQGFLNEMFVWWHRLPRRVNFLKNFWANTTLEASVKNALFGAEPPKLYAIHYLGLKPWHCYRDYDCNWDVEDQRVYASDVAHRRWWKVHDAMDHRLQSLCRLTRNRRTELNWERRKARKLALPDMHWNINVTDPRRSGSLLMD 524
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cca05g00179 524 CDD GT8_Glycogenin 229 473 - -
Cca05g00179 524 Gene3D Spore Coat Polysaccharide Biosynthesis Protein SpsA; Chain A 227 477 IPR029044 -
Cca05g00179 524 SUPERFAMILY Nucleotide-diphospho-sugar transferases 229 477 IPR029044 -
Cca05g00179 524 PANTHER UDP-GLUCURONATE:XYLAN ALPHA-GLUCURONOSYLTRANSFERASE 2 13 518 IPR030519 GO:0005794|GO:0009834|GO:0015020|GO:0045492
Cca05g00179 524 Pfam Glycosyl transferase family 8 265 338 IPR002495 GO:0016757
Cca05g00179 524 PANTHER GLYCOGENIN SUBFAMILY MEMBER 13 518 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Cca05g00179 Cca-Chr5 4047311 4054542 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Cca05g00179 1 523 Glycosyltransferase AT4G33330 66.604 0.0 743
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Cca05g00179 05 4047311 4054542 Cca05g00179 05 4047311 4054542 ECH
Cca05g00179 05 4047311 4054542 Cca07g00441 07 5843089 5846148 PCT