Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cca05g00178 ATGGAGGATGCTGAAGACAAGCCATCCTCAGAATCAGAAACCTCTTCAACAAGTGCTGAACTGAGGCCACAAGCAGAAACCCCTGAAGAGAATACTGCTATGATAAATCCACCCGATAGCCAGTCTTCCATTGAAGCTGCCACCAATCAACTCAGTAATAATAGTAGAGTGGAACCTGGCACTCATTTTCCAGGAACTAAGTTCTCAGACTTAGAAGAGTCCCTAAAAGCTTCTGATGGTCAAACTGTAGGACAGGATGAATATCATCACACTGATAATGATAATCCATCTTCTACTCCTAAAGCCACAATTCATGATACAGAACAAAGCCACCACATGGTATCACATCCCGAATCAGGAGCTTTAGAAGATGTCTTTAACAGGCAGCAGGATGGTGTTTCTACCACCACTGGTACCGATGATGTTGATAATTCAATGAATCTCTCACCTTCCTCTTCTGAAACAACAGAGTTGCAGACTAATCCCACAGAACGAATAACAGACCCACCTCAAACCAAGGTTAATGATGTTCATGTTCCCATAGATAATTCAGCTTCAACACCAAATGTTAGTGTTCATGTAATAGAACAAAGCAACCAGGGAGGGATGTCTGCAGATTCTGAATCTCAAGCTTTAGAAGATATCTCAAACGGGCAGCAGGATGGTGGTTCTACTCTCAGTGCTGGAAGTAATGTTGGTAATCAGATGGAACTCTCAAATTCCCCTTCTGTGGAAAAAGAGTTGCAGAATGACCACAAAGAACTAATGAAAAAACCAATAATTGATCCATCTCAAACCACGGATACTGATGCTGCAGAGCTAGCTGTTGGTTCACCTGCTGGCAAGGATGATGATAATCAGATAGAACTCTTGGCTTCCTCTTCTGAAAAGACGGATTTGCCAAGTGATCACAAAGAACTTAAGATAGAACTGCCTCAAACGGAAATTGATGATGTGTCTGTCGAAGCTGTTGACTTACCTTCTGTCAGTGATGATAATCAGATAAAACTATTGGCGTCCTCTTCTGAAAATGTAGAGTTCCAGAATGACCAGAAAGAACTAACGACAGATCCGTCTCGCAATATTAATGATGTTGTTGTGGGAGCTGTTGACTCACCTACTTATGCCAAGCAGATTGCTGAAAAAAGAGGCCTTATTGATACAGCAGCTCCATTTGAATCTGTCAAGGAAGCTGTTTCCAAGTTTGGAGGCATTGTGGACTGGAAGGCTCATAGAATCCAGACCGTGGAGAGACGCAAGCATGTAGAACTTGAACTTGATAAGGCACAGCAGGAGATCCCGGTGTACCAAAAAAAATCACAAGCTGCTGAGCAAGCAAAAATGCAAGTACTGTTAGAGCTGGATAGCACAAAGAGACTAATAGAAGAACTAAAACTTAACCTAGAGAGGGCACAAACAGAAGAGCGTCAAGCAAGNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNACAAACAGAGGAGCGTCAAGCAAGACAGGACTCAGAACTTGCAAAGCTGAGAGTGGAAGAGATGGAGCAAGGTATTGCTGATGACTCCAGCATTGCTGCCAAGGCACAGCTTGAGGTAGCTAAAGCCAGGTATTCATCTGCTATCACGGAGTTAACATCTGTTAAAGAGGAGCTGGATGCATTGCGTGTGGAATATGCATCCTTAGTTGATGAAAAAGATGAAGCTGTTAAGAAAGCTGAAGAGGCTGTTGCTTCATCAAAGCAAGTAGAGAAGACAGTGGAAGACTTGACTATTGAGCTCATTGCCACAAAGGAGGCACTGGAATCTGCTCATGCTGCACACATGGAAGCAGAGGAACACAGAATAGGGATAGTCATGGCAAGAGATCAAGATTCTCTCAATTGGGACAAAGAACTTAAACAGGCAGAAGAAGAACTTCAGAGACTCAACCAGAAGATTTTGTCTGCTAATGATCTCAAATCTAAACTCAACACAGCCTCGGCTTTGCTGCTTGATTTGAAAGCCGAGTTAAATGTTTATATGGAATCATCTAAGTCTAAGCATGAAGGTGATGAAGGAGAGTTAGAGGAGCCAGAGAAGAAGACTCACAGTGAAATACAAGAAGCAGTTGCATCAGCCAAAAAGGAGCTTGAGGAAGTAAAGCTTAACATAGAGAAAGCCACCACTGAGGTAAATTACCTAAAGGTGGCTGCAGCATCATTGAAATCAGAACTTGAAAATGAGAAATCATCTCTTGCATCGATTCGACAAAGAGAGGGAATGGCCTCCGTTACGGTTTCATCTCTTGAATCTGATCTACACAACACTAGATCAGAAATGGCTTTGGTTCAGATGAGGGAGAAAGAAGGCAGAGAGAGGATTCAGGAGCTTCCAAAGAAACTACAGCAAGCAGTTGAAGAGGCTAATCAGGCCAACTTGTTTGCTCAAGCAGCTCGCGAAGAGTTGAGGAGAGTGAAGGAGGAGGCAGAACAAGCCGAGGCTTGTGCAAGTACAATGCAAAGTAAATTACTTGCAGCACAAAAAGAGATAGAGGCTGCAAGGGCCTCTGAAATGTTGGCAATAGCAGCAACTAAAGCATTGAATGAGTCATCTAGGAACAACAACAATGAAGCAGTGGATTCATCCTCTTGGGTGTCGGTTTCGGTGGAGGAGTACTATAATCTCAGCAAACAAGCACATGAAGCAGAAGATCAAGCCAACATTAGGGTTGCAGCTGCTAATTCTGAAATCAAGATAGCTAAGGAGTCTGAATTGAAAACCTTGCAGAAGTTGAATGATGTGACTAGAGAGATGGCTGCTAGAAGGGAGTCTCTGAAGATTGCAATGGAGAAAGCCGAAAAGGCAAGGGAAGGAAAATTAGGTGTAGAACAAGAATTGAGAAAATGGAGGGCTGAACATGAGCAAAGAAGAAAAGCTGGTGGATTGGGCCAAGGAGAAGTAACGCAAAGTAGAAGTACCAAGATATCTGAACATCTCATCCTTTTGGAGGTTATTCAAAGTTATACCATACTTGTACATGTTAGTCATTGCTGTGTGTATGATAATGGTTCATTGCATTATACTCCATCTCACTGA 3171 0.4087 MEDAEDKPSSESETSSTSAELRPQAETPEENTAMINPPDSQSSIEAATNQLSNNSRVEPGTHFPGTKFSDLEESLKASDGQTVGQDEYHHTDNDNPSSTPKATIHDTEQSHHMVSHPESGALEDVFNRQQDGVSTTTGTDDVDNSMNLSPSSSETTELQTNPTERITDPPQTKVNDVHVPIDNSASTPNVSVHVIEQSNQGGMSADSESQALEDISNGQQDGGSTLSAGSNVGNQMELSNSPSVEKELQNDHKELMKKPIIDPSQTTDTDAAELAVGSPAGKDDDNQIELLASSSEKTDLPSDHKELKIELPQTEIDDVSVEAVDLPSVSDDNQIKLLASSSENVEFQNDQKELTTDPSRNINDVVVGAVDSPTYAKQIAEKRGLIDTAAPFESVKEAVSKFGGIVDWKAHRIQTVERRKHVELELDKAQQEIPVYQKKSQAAEQAKMQVLLELDSTKRLIEELKLNLERAQTEERQAXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXQTEERQARQDSELAKLRVEEMEQGIADDSSIAAKAQLEVAKARYSSAITELTSVKEELDALRVEYASLVDEKDEAVKKAEEAVASSKQVEKTVEDLTIELIATKEALESAHAAHMEAEEHRIGIVMARDQDSLNWDKELKQAEEELQRLNQKILSANDLKSKLNTASALLLDLKAELNVYMESSKSKHEGDEGELEEPEKKTHSEIQEAVASAKKELEEVKLNIEKATTEVNYLKVAAASLKSELENEKSSLASIRQREGMASVTVSSLESDLHNTRSEMALVQMREKEGRERIQELPKKLQQAVEEANQANLFAQAAREELRRVKEEAEQAEACASTMQSKLLAAQKEIEAARASEMLAIAATKALNESSRNNNNEAVDSSSWVSVSVEEYYNLSKQAHEAEDQANIRVAAANSEIKIAKESELKTLQKLNDVTREMAARRESLKIAMEKAEKAREGKLGVEQELRKWRAEHEQRRKAGGLGQGEVTQSRSTKISEHLILLEVIQSYTILVHVSHCCVYDNGSLHYTPSH 1056
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cca05g00178 1056 Coils Coil 728 755 - -
Cca05g00178 1056 MobiDBLite consensus disorder prediction 177 245 - -
Cca05g00178 1056 MobiDBLite consensus disorder prediction 1 286 - -
Cca05g00178 1056 PANTHER HEAVY CHAIN, PUTATIVE, EXPRESSED-RELATED-RELATED 24 479 - -
Cca05g00178 1056 PANTHER WEB FAMILY PROTEIN-RELATED 24 479 - -
Cca05g00178 1056 Pfam Weak chloroplast movement under blue light 525 1001 IPR008545 -
Cca05g00178 1056 Pfam Weak chloroplast movement under blue light 383 479 IPR008545 -
Cca05g00178 1056 Coils Coil 826 867 - -
Cca05g00178 1056 Coils Coil 412 478 - -
Cca05g00178 1056 Coils Coil 526 544 - -
Cca05g00178 1056 Coils Coil 763 783 - -
Cca05g00178 1056 Coils Coil 960 980 - -
Cca05g00178 1056 MobiDBLite consensus disorder prediction 128 170 - -
Cca05g00178 1056 Coils Coil 569 603 - -
Cca05g00178 1056 Coils Coil 657 701 - -
Cca05g00178 1056 MobiDBLite consensus disorder prediction 11 60 - -
Cca05g00178 1056 PANTHER WEB FAMILY PROTEIN-RELATED 525 1017 - -
Cca05g00178 1056 PANTHER HEAVY CHAIN, PUTATIVE, EXPRESSED-RELATED-RELATED 525 1017 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Cca05g00178 Cca-Chr5 4028125 4032948 Dispersed/Wgd
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Cca05g00178 05 4028125 4032948 Cca05g00178 05 4028125 4032948 ECH
Cca05g00178 05 4028125 4032948 Cca07g00442 07 5858061 5864198 PCT