Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cca05g00169 ATGGACGGTTACGACGGCACCGTCAGGCTCGGCGCCCTCAACTTGCGCCACGATCGcgccgccgatttcgacgctgccgccgccgccgacgtgtccgtctcctcgccggtcacgcggcagaaagccgccgccgccAAGCAGTTCATCGAGAATCATTACAAAAACTATCTCCAAGGATTGCAGGATCGCAAAGACAGACGCAGAGCGCTTCAGAGAAGAGTGCAAGAATCTCAGATATCGGTTGAGGAGCAGGAGGAAATGATGAGGAATTTGGAGCGGCGAGAAACTGAGTACATGAGGCTTCAGAGACGTAAGATTGGAATTGATGACTTCGAGCAGTTAACAGTGATTGGCAAAGGTGCTTTTGGTGAGGTGAGGTTATGTCGTGCTAAAAGTACAGGAGAGATTTTTGCCATGAAGAAATTGAAGAAGTCAGAGATGCTTAGTCGCGGACAGGTGGAACATGTTCGATCTGAGAGGAACTTGCTGGCTGAGGTTGATAGCAGATGCATAGTGAAACTGCATTATTCATTCCAAGATTCGGAATTCCTATATCTCATCATGGAATATTTACCTGGTGGTGACATCATGACGTTGTTAATGAGAGAAGATATTCTTTCTGAAGATGTTGCTCGCTTCTACATTGCTGAAAGCATTCTTGCTATTCATTCAATACATCAACACAACTATGTACATAGGGATATTAAACCTGATAATCTGATACTGGATAAAAATGGCCATTTGAAGCTTTCGGACTTTGGGTTATGTAAGCCTCTTGATGATAAGTATTCATCAATTTTATTGGAAAATGAAGATCTCGGTCAAGAATCAACCAGTGAAACTGAAGGATATTCTGCCTCTCCTTGGTTGATGCCAAAGGAGCAATTACAGCAGTGGAAACGTAATCGCCGTGCATTGGCGTATTCAACTGTTGGAACTCTTGATTATATGGCACCTGAAGTTTTGCTCAAGAAGGGATATGGAATAGAATGTGATTGGTGGTCTCTTGGGGCAATTATGTATGAGATGATTATTGGGTATCCTCCATTTTGTTCTGACGATCCAAGGATGGCCTGCCGTAAGATTGTTAACTGGAAAACATGTCTGAAATTCCCTGAAGAACCCAAGATATCAGCTGAAGCAAAGGATCTGATCTGTCACTTACTATGTGACGTTGACTCAAGACTAGGTACAAGAGGAGTAGAAGAAATAAAGGCTCATCCATGGTTCAAGTCTGTTCAGTGGGACATGCTTTATGAATCAGAAGCTGCATATAAACCCACAGTCACTAGTGACTTGGATACTCAAAATTTTGAGAAGTTTCCTGAAGTAGATGGCCCACCATCTGTAACAGCCACTGTTGGACCATGGCGGAAGATGCTGACGTCCAAAGATAACAATTTCATAGGATATACTTTTAAGAAGTCAGACATCCCTAAATCGCTTGAAACCTCAGATGCAGATATCAGAGTAAATGGATCATTGAAGACCCCTTCCTTGATTACCTTGTTAGGTCGGATTGATTTGCAAGATACTGTCATACCAGAAAGTGAGCAGAAGCCAGAAGCTTGA 1572 0.4008 MDGYDGTVRLGALNLRHDRAADFDAAAAADVSVSSPVTRQKAAAAKQFIENHYKNYLQGLQDRKDRRRALQRRVQESQISVEEQEEMMRNLERRETEYMRLQRRKIGIDDFEQLTVIGKGAFGEVRLCRAKSTGEIFAMKKLKKSEMLSRGQVEHVRSERNLLAEVDSRCIVKLHYSFQDSEFLYLIMEYLPGGDIMTLLMREDILSEDVARFYIAESILAIHSIHQHNYVHRDIKPDNLILDKNGHLKLSDFGLCKPLDDKYSSILLENEDLGQESTSETEGYSASPWLMPKEQLQQWKRNRRALAYSTVGTLDYMAPEVLLKKGYGIECDWWSLGAIMYEMIIGYPPFCSDDPRMACRKIVNWKTCLKFPEEPKISAEAKDLICHLLCDVDSRLGTRGVEEIKAHPWFKSVQWDMLYESEAAYKPTVTSDLDTQNFEKFPEVDGPPSVTATVGPWRKMLTSKDNNFIGYTFKKSDIPKSLETSDADIRVNGSLKTPSLITLLGRIDLQDTVIPESEQKPEA 523
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cca05g00169 523 Pfam Protein kinase C terminal domain 429 473 IPR017892 GO:0004674|GO:0005524|GO:0006468
Cca05g00169 523 CDD STKc_NDR_like 109 474 - -
Cca05g00169 523 Gene3D Phosphorylase Kinase; domain 1 80 194 - -
Cca05g00169 523 Pfam Protein kinase domain 111 410 IPR000719 GO:0004672|GO:0005524|GO:0006468
Cca05g00169 523 ProSitePatterns Protein kinases ATP-binding region signature. 117 140 IPR017441 GO:0005524
Cca05g00169 523 Gene3D Transferase(Phosphotransferase) domain 1 307 430 - -
Cca05g00169 523 Gene3D Transferase(Phosphotransferase) domain 1 195 262 - -
Cca05g00169 523 SMART serkin_6 111 410 IPR000719 GO:0004672|GO:0005524|GO:0006468
Cca05g00169 523 PANTHER NON-SPECIFIC SERINE/THREONINE PROTEIN KINASE 30 509 - -
Cca05g00169 523 ProSiteProfiles Protein kinase domain profile. 111 410 IPR000719 GO:0004672|GO:0005524|GO:0006468
Cca05g00169 523 ProSiteProfiles AGC-kinase C-terminal domain profile. 411 483 IPR000961 GO:0004674|GO:0005524|GO:0006468
Cca05g00169 523 ProSitePatterns Serine/Threonine protein kinases active-site signature. 230 242 IPR008271 GO:0004672|GO:0006468
Cca05g00169 523 SUPERFAMILY Protein kinase-like (PK-like) 86 462 IPR011009 -
Cca05g00169 523 Coils Coil 67 104 - -
Cca05g00169 523 SMART pkinase_C_6 411 475 IPR000961 GO:0004674|GO:0005524|GO:0006468
Cca05g00169 523 PANTHER SERINE/THREONINE-PROTEIN KINASE 30 509 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Cca05g00169 Cca-Chr5 3851509 3858710 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Cca05g00169 1 511 AGC Kinase Gene Family AT5G09890 77.670 0.0 832
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK AGC_NDR Cca05g00169 Pkinase 1.9e-64 CL0016
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Cca05g00169 05 3851509 3858710 Cca05g00169 05 3851509 3858710 ECH