Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cca05g00168 ATGTCTCCGTTTGGGTTATTGCGGGTAGTAGTGGTTGTGTGGGTGTGGTCAGAAGGTATTATTGGTAATGCAAAAGATATTTATGAAACAAAAGACAACAACATAGAGTGCAAGTCCAAGATTATTGTGAACATTGGAGGCCTCATAGACATGAGTTCACGTGTGGGAAAGGAGCAGAAGATAGCAATGGAAGTTGCAGTGGACGATGTAAATGATCAAAGTTGCCATAAGCTTGCCTTGAACATCAATAGTAATGCTCATCGGAACTCATCTCCTATGTTGGCTGCCGATCTTGCAAACAGCAAGCAAGTGCAAGTTGTCGTAGGAACAAAACTCGATGCAGCAACGTTATTCCACTCCATTGATGAAAACTCAAACGATGTCCCCATCATATCTCTAGCCTCAACCGCTAGTCCAGAAACAACCTCAATCCCATTGCCAGACTTCATCCAAATGGGCCACGATGTCACCCTTCACATGCACTGCATTGCATCCATCATACACCAATTCCATTGGCGAAAGGTCACACCAATTTACGAACACAACAACTTCTACACCTCTCACTCACAAATACTAACAACACTCTCTTATTCTCTCCGTCTCGTCAACGCTGAAATCGATCACCACGTGGCTTTTCCTTCGATTTCCTCTCTTTCAAACCCAATAGAAAGCATAGAACAAGAGCTTACGAGGCTTAAGAACAAGAGCAATAGGGTGTTCTTGCTTGTTCAATCTTCCTTGGAGTTTGCCACGTTGCTGTTTGAGAAGGCAAAGAAAATGGGAATGATGGAAAAAGGGTCGGTTTGGATCATCACAGATGATGTAGCCACTCATCTTGATTCGTTGGATTCTTCTGTCACATTCAACATGCAAGGTGTTATAGGGTGCAAGACCAACTTCATGGAAACGAGTCAAACTTTCAAACGTTTCAAGTTCATGTTTAGGAAAAGGTTTGGATTGGAATACCCTCAAGAAGAAAACTCAAAACCAAGTATCTTTGCTCTTAGGGCTTATGATGTTGTTTGGATCATTGCTGATGCCTTGAAGAAGACACAAAGAAATAAAATTTCCTTATCAGAGAATATTTTACATAGTAATCATGAGGGGCTTAGTGGGAAGATAAGGTTCAAAGACAGAATGTTGTTGGATCCACCAACCTTTAAGGTAGTCAATGTTGTTGGAAAGGGTTACAAAGAGTTAGCATATTGGTCTTTAGGGTTTGGTTTCAGTGAGAACCTTGTTGAGCATAAGAACGCAACAACTTGTGGTGGTTCTGCTAGAGTGCTTTTAGGTTCTGTGGATTGGCCTGGTGGGTTGAAAACAGTTCCAAAAGGTTGGGTTTACAATAGCACTAAGGGAAGGCCTTTGAAAATTGGGGTTCCAGCTATTGATCCTTGTCCTCAGTTTGTGAATGTGAGCCATGATAAGAGGCTGAATGAAACACAATTCACTGGTTTCTCAATCAATGTCTTTGAATCAGTTGTGAAACGCCTGCCTTATCCCTTGCCTTTTGTTTTTGTGCCATTTTATGGCTCTTATGATCAAATAGTTGAACAAGTGAGCAGCAAGTACCTTGATGCTGCTGTTGGAGATATACAAGTGGTGGAACATAGATATGCTTTTGCTGAATTCTCTCATCCATATGTTGAATCTGGTATAGCCATGGTAGTGAAAGTAAAGCCAAATAGATCCAAAGAAACGTGGATGTTCATGGACGCTTTCACAAAAGAAATGTGGTTATTGATGGGGATAATGCACCTGTTCATAGCATTTGTAATATGGTTCATTGAAGGTCAAAGCAATTCGGAACTTCAGAGTTTTGGGGCCATTCTCTGGTTTTCTGTCACCATATTATTCTTTGCACACAGAGAACCTGTAAAGACCAACTTGGCCCGACTTGTTCTAGCACCTTGGTTATTTGCTATTCTGATTGTGACTCAAAGTTTTACAGCTAGCTTGTCATCCATGATGACAGTGTCCCATCTTGAACCATCTGTGCCAGATATACAAACATTGTTGAGGACAAATGCAATCATAGGGTGCAACAAGAACACTTTTTTGGTCCAATACTTAGTTGATGAACTCAAGTTCCAGCCTCAGAATATCAAAGTATTTGACTCCATCCATGATTTCCCAAGAGCCTTTGAGAACAAAGAAATTGTGGCTTCTTTTACCATTTCCCCTCATGCTGATGTTTTCCTAGCTACTTATTGCAAGGGCTACACCAAAGCTACCTTCTTGAAACTTGGTGGATTAGGCTTTGCGTTTCCAAAAGGGTCAGGTTTAGCAATTGACATGTCACGAGCAACCCTAAGAGCCATAGAAAGTGGAGAAGTGAAAAAATTAGAAGAGAATATGTGGTCCAACACCAATTGTGGGTCTACAAATAGCAAAATACAAAATGAACAACTTGGTCCTCAACCTTTCTTTGGCCTATTTGGTATCTGTGGAGCCATTGCTCTCTTTGGTTTATTGGCAGCCATTATTCATTTTGTTAAAAGGAATGCAGAGACATTTGTGACCTTCATATCATTGTTACACTTGCAAAGAGGATTATAA 2559 0.408 MSPFGLLRVVVVVWVWSEGIIGNAKDIYETKDNNIECKSKIIVNIGGLIDMSSRVGKEQKIAMEVAVDDVNDQSCHKLALNINSNAHRNSSPMLAADLANSKQVQVVVGTKLDAATLFHSIDENSNDVPIISLASTASPETTSIPLPDFIQMGHDVTLHMHCIASIIHQFHWRKVTPIYEHNNFYTSHSQILTTLSYSLRLVNAEIDHHVAFPSISSLSNPIESIEQELTRLKNKSNRVFLLVQSSLEFATLLFEKAKKMGMMEKGSVWIITDDVATHLDSLDSSVTFNMQGVIGCKTNFMETSQTFKRFKFMFRKRFGLEYPQEENSKPSIFALRAYDVVWIIADALKKTQRNKISLSENILHSNHEGLSGKIRFKDRMLLDPPTFKVVNVVGKGYKELAYWSLGFGFSENLVEHKNATTCGGSARVLLGSVDWPGGLKTVPKGWVYNSTKGRPLKIGVPAIDPCPQFVNVSHDKRLNETQFTGFSINVFESVVKRLPYPLPFVFVPFYGSYDQIVEQVSSKYLDAAVGDIQVVEHRYAFAEFSHPYVESGIAMVVKVKPNRSKETWMFMDAFTKEMWLLMGIMHLFIAFVIWFIEGQSNSELQSFGAILWFSVTILFFAHREPVKTNLARLVLAPWLFAILIVTQSFTASLSSMMTVSHLEPSVPDIQTLLRTNAIIGCNKNTFLVQYLVDELKFQPQNIKVFDSIHDFPRAFENKEIVASFTISPHADVFLATYCKGYTKATFLKLGGLGFAFPKGSGLAIDMSRATLRAIESGEVKKLEENMWSNTNCGSTNSKIQNEQLGPQPFFGLFGICGAIALFGLLAAIIHFVKRNAETFVTFISLLHLQRGL 852
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cca05g00168 852 Gene3D - 158 327 - -
Cca05g00168 852 Gene3D - 566 698 - -
Cca05g00168 852 PANTHER IONOTROPIC GLUTAMATE RECEPTOR 39 837 - -
Cca05g00168 852 CDD GluR_Plant 454 786 - -
Cca05g00168 852 Pfam Ligand-gated ion channel 785 817 IPR001320 GO:0015276|GO:0016020
Cca05g00168 852 SUPERFAMILY Periplasmic binding protein-like II 435 784 - -
Cca05g00168 852 PIRSF IGluLR_plant 9 844 IPR017103 -
Cca05g00168 852 Gene3D - 36 157 - -
Cca05g00168 852 Gene3D - 333 457 - -
Cca05g00168 852 CDD PBP1_GABAb_receptor_plant 44 413 IPR044440 -
Cca05g00168 852 Gene3D - 551 560 - -
Cca05g00168 852 SMART GluR_14 457 789 IPR001320 GO:0015276|GO:0016020
Cca05g00168 852 Pfam Receptor family ligand binding region 60 393 IPR001828 -
Cca05g00168 852 Pfam Bacterial extracellular solute-binding proteins, family 3 480 784 IPR001638 -
Cca05g00168 852 PANTHER GLUTAMATE RECEPTOR 39 837 - -
Cca05g00168 852 SUPERFAMILY Periplasmic binding protein-like I 43 446 IPR028082 -
Cca05g00168 852 Gene3D - 479 550 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Cca05g00168 Cca-Chr5 3838349 3845617 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Cca05g00168 43 839 Ion Channels AT2G29120 30.632 4.26e-111 360