Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cca05g00167 ATGGAAGACGGCGACACGACGGAGGATGCGGCTGTTGTTCCGGTCGCAAGCGGCGACGGCGACGGCGACGCGCTTGGGTTTCCACATTCCTCGCGCCACCGCGATCCGGAGGAGGAATTTCCGCAAGAATTGCTGCGTAACACGAAGGCTTCATTAGAGAACATCGTGGCCGAGATTCTCTCTCTCAAGAGCCATCCCAAGCCCAAACCTCTCCTCACTCTCCGTCTCCGAGAGCTCCTCACTCAAACGTTCCTCCACTTCGTCACTCTCCGCCAGGCGAACCGGTCGATCTTGCTGGAGGAGGAGCGTGCGAGAACGGAGACGGAGCGTGCGAAGGCGCCTCTGGAACGCACCGCGCAGCAGCTTCACAATCTCGTGTACGAGAAGAGTCACTACGCGAAAGCGATTAAGGCGTGTAGCGATTTCAAGTCGAAGTATCCCGATATTGAAGTGGCGTCGGAGGACGAGTTTTTTCGCGACGCGCCTCGGAATATGAAGGACGCTGTTTTGTCTAATCACAGTGAACATAACCTCGTGCTTAAGAGGCTCAATTTTGAGCTGTTCCAGCGCAAAGAGCTTTGCAAACTTCATGACAAACTGGAACAGACAAGAAAAATCCTTCTGGAGACTATTGCAAACCGAAAGAAATTCTTGTCTAGTCTCCCTTCACAGCTCAAGTCTCTTAAAAAAGCATCCTTGCCGGTGCAAAATCAGCTAGGAGTTCAGCATACTAAGAAACTAAAGCGGCATCATTCAGCAGGGTTACTTCCACCACCTCTTTATGTGATTTACTCACAGTTGTTGGCTCAAATGGAGGCATTTGGAGAATCTATTGACATGGAGATTATAGGAAGCGTCAAAGATGCTCAATCTTTTGCCCGCCATCAAGCTTACAAGGACACTGGCATTTCCACCTCTGCGGAGAGTTACAAATTGGAAAATGATGTACCCGACGAAGATGGTCAGAGACAGAGTAAAAGGTCAAGGAGATTTCAAGGCAAGGAGAGCCTTGACCAGGCAGGAATGTTTCAAAATCACCCACTTGCTGTCAATCTTCATGTGTATGATAACGAGGTTTCTGATCTTGAGTCAGCAAAACTCGTTACTCTAAAGTTTGAGTATTTGATGCAGTTGAATATTATATGTGTTGGAATCGAAGCATCTAATGATGGTCCTGAGAATGACATCTTATGCAATTTATTCCCTGATGACACAGGTCTTGAGCTTCCTCACCAGTCAGCTAAGCTCATTGTTGGGGAAGCTACAATGTTTAATGGTGATAGAACTTCACGTCCTTATAAATGGGCTCAGCACCTGGCAGGCATTGATTTCTTGCCTGAGGTGGCTCCCTTGCTGCTTGTTAGCCGGGAAACTTCTTCAGACAGTGGTGAAGATGTCATACATAGTCTTTCACAATATCGCCAGCATAACCAATTACAGACAATTCTGCAGAAAATTCGCTCAAGGGCAAAAGCTAAGTTGTCTCTTCAATAA 1494 0.4766 MEDGDTTEDAAVVPVASGDGDGDALGFPHSSRHRDPEEEFPQELLRNTKASLENIVAEILSLKSHPKPKPLLTLRLRELLTQTFLHFVTLRQANRSILLEEERARTETERAKAPLERTAQQLHNLVYEKSHYAKAIKACSDFKSKYPDIEVASEDEFFRDAPRNMKDAVLSNHSEHNLVLKRLNFELFQRKELCKLHDKLEQTRKILLETIANRKKFLSSLPSQLKSLKKASLPVQNQLGVQHTKKLKRHHSAGLLPPPLYVIYSQLLAQMEAFGESIDMEIIGSVKDAQSFARHQAYKDTGISTSAESYKLENDVPDEDGQRQSKRSRRFQGKESLDQAGMFQNHPLAVNLHVYDNEVSDLESAKLVTLKFEYLMQLNIICVGIEASNDGPENDILCNLFPDDTGLELPHQSAKLIVGEATMFNGDRTSRPYKWAQHLAGIDFLPEVAPLLLVSRETSSDSGEDVIHSLSQYRQHNQLQTILQKIRSRAKAKLSLQ 497
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cca05g00167 497 MobiDBLite consensus disorder prediction 1 40 - -
Cca05g00167 497 MobiDBLite consensus disorder prediction 312 334 - -
Cca05g00167 497 Pfam Fms-interacting protein/Thoc5 89 444 IPR019163 -
Cca05g00167 497 MobiDBLite consensus disorder prediction 309 335 - -
Cca05g00167 497 MobiDBLite consensus disorder prediction 26 40 - -
Cca05g00167 497 PANTHER FMS INTERACTING PROTEIN 33 497 IPR019163 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Cca05g00167 Cca-Chr5 3829548 3835919 Dispersed/Wgd
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Cca05g00167 05 3829548 3835919 Cca05g00167 05 3829548 3835919 ECH
Cca05g00167 05 3829548 3835919 Cca07g00451 07 5963788 5969584 PCT