Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cca05g00163 ATGGCACTTCTTCTAGACAACTGTGAAAGCATTTTGCTCTCTTTGGACACACACAAGTCAGTCCCTGCACCTTTCCTCACCAAAACATACCAACTCGTCGACGACCCCTCCACCGACCACATAGTCTCGTGGGGCGAAGACGACACCACCTTCGTCGTTTGGCGCCCTCCTGAGTTCGCCAGAGACCTTCTCCCTAACTACTTCAAACACAACAATTTCTCCAGCTTCGTTCGCCAACTCAACACCTATGGTTTCAGAAAGATTGTGCCAGATAGGTGGGAGTTCGCGAACGAGTTCTTCAAGAAAGGAGAGAAGCACTTATTGTGCGAGATCCACAGAAGGAAAACCCCTCAGCAGCAGCAACAACAAATGCAAGGTGTGAACCACCAGCACCAGTTTGTGCCACCTTTCTTCCCCTTCCACAACAGCGTTTCCCCACCGCACGATTCCGAAGATGTAGTACCCAATTGGTGCGACTCACCCCAAAGAGGAGGAATCACAAATGGAAACAACAACTTCAGCATCAACAACTACCACACTGTCACTGCGCTTGCCGAAGACAACGAAAGACTTAGGAGAAGCAACAACATGCTCCTGTCGGAACTGGCACACATGAAGAAGCTTTACAACGACATAATCTACTTCGTTCAGAACCATGTGAAGCCAGTGACTCCAAGCAGCACTTTCCCTTCTTTTCCACTGCCACAAGCCTCTCGTAACGTGGAGAGGCCAGTGAAGCAGTTTGTGGGGTGTTACACGAAtaacactaacaccaacaccaacactaacactaacactaaGCAAGCGCGTGGTGCGAACTCTCCCACTAACAGCTCCATAACCATTGTGGAAGAAGAGCATAGCAGTAACAGGTGCAAGACGAAGCTTTTCGGGGTGTCTCTTCAGTCCAAGAAAAGGGTGCACCCCGAGTACGGATCCAACTATTTCGCCGCATCGGAAACGAATAATAAGGCGCGTTTGGTCGTGGAAAATGATGACTTGGGCTTGAACCTCATGCCCCCTTCTTCCACCACTTGCTAG 1041 0.4822 MALLLDNCESILLSLDTHKSVPAPFLTKTYQLVDDPSTDHIVSWGEDDTTFVVWRPPEFARDLLPNYFKHNNFSSFVRQLNTYGFRKIVPDRWEFANEFFKKGEKHLLCEIHRRKTPQQQQQQMQGVNHQHQFVPPFFPFHNSVSPPHDSEDVVPNWCDSPQRGGITNGNNNFSINNYHTVTALAEDNERLRRSNNMLLSELAHMKKLYNDIIYFVQNHVKPVTPSSTFPSFPLPQASRNVERPVKQFVGCYTNNTNTNTNTNTNTKQARGANSPTNSSITIVEEEHSSNRCKTKLFGVSLQSKKRVHPEYGSNYFAASETNNKARLVVENDDLGLNLMPPSSTTC 346
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cca05g00163 346 Gene3D - 17 116 IPR036388 -
Cca05g00163 346 PANTHER HEAT SHOCK TRANSCRIPTION FACTOR 12 342 IPR027725 -
Cca05g00163 346 PRINTS Heat shock factor (HSF) domain signature 25 48 IPR000232 GO:0003700|GO:0006355|GO:0043565
Cca05g00163 346 PRINTS Heat shock factor (HSF) domain signature 63 75 IPR000232 GO:0003700|GO:0006355|GO:0043565
Cca05g00163 346 PRINTS Heat shock factor (HSF) domain signature 76 88 IPR000232 GO:0003700|GO:0006355|GO:0043565
Cca05g00163 346 ProSitePatterns HSF-type DNA-binding domain signature. 64 88 IPR000232 GO:0003700|GO:0006355|GO:0043565
Cca05g00163 346 SMART hsfneu3 21 114 IPR000232 GO:0003700|GO:0006355|GO:0043565
Cca05g00163 346 Pfam HSF-type DNA-binding 25 114 IPR000232 GO:0003700|GO:0006355|GO:0043565
Cca05g00163 346 PANTHER BNAC06G00310D PROTEIN 12 342 - -
Cca05g00163 346 SUPERFAMILY "Winged helix" DNA-binding domain 22 114 IPR036390 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Cca05g00163 Cca-Chr5 3718937 3720668 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Cca05g00163 1 343 HSF AT1G46264 54.839 2.20e-114 334
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF HSF Cca05g00163 HSF_DNA-bind 2.3e-32 CL0123
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Cca05g00163 05 3718937 3720668 Cca05g00163 05 3718937 3720668 ECH
Cca05g00163 05 3718937 3720668 Cca07g00453 07 6034369 6035929 PCT