Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cca05g00162 ATGACTTTCCCTCAGCATCACTTCCAACGGCACTACCAAGCCCAACAACAACAGCCACAAACCAAATCCTTCAGAAATCTGCAAACAATCGATGGTCAAATGTCACAGCAGGTTGCGTTTTACAGCCCCACTGATTTGCAAGATCAGCCCCAGCATCCGCCCTATATTCCTCCATTTCATGTTGTTGGGTTTGCCCCGGGTCCTGTTCCTCCTGCTGATGGCAGTGATGGTGGAGTTGATTTGCAATTGCAATGGAATTATGGTTTGGAGCCAGAGAGGAAGAGACTAAAAGAACAGGATTTTTTGGAGAACAATTCTCAAATATCTTCTGTTGATTTCCATCAACCCCGATCAGTGTCGACTGGGTTGGGCTTGTCACTTGACAATACTCGCCTGACTTCCACTGGAGATTTGGCTTTGTTGTCGCTCATTGGTGATGACATTGAACGTGAGTTGCAGCAGCAGGATGTAGAGATAGATAGGTTTCTCAAAGTGCAGGGTGAACGATTGCGACAAACAATCTTGGAGAAGGTTCAGGCAACACAGCTTCAGAGTGTCTCACTCATTGAAGACAAAGTCCTTCAGAAACTTCGCGAGAAAGAAGCTGAGGTAGAAAGCATCAATAAGAGGAACATGGAACTCGAAGATCGAATGGAGCAGTTAACTGTAGAAGTTGGTACATGGCAACAGCGAGCAAGATACAACGAAAACATGATTGCTGCTCTCAAGTTTAACCTACAGCAAGCATATGTTCAAAGCAGAGATAGTAAAGAAGGGTGCGGTGACAGCGAAGTAGACGATACAGCCTCTTGCTGCAACGACCGTTCACTTGATTTTCATCTGCTTTCGAAGGAGAATACTGATGTGAAAGAGATGATGACATGCAAGGCTTGCAGAGTCAATGAAGTGACCATGGTTTTGTTACCTTGTAAGCATCTTTGCCTCTGTAAAGATTGTGAAAGTAAGCTTAGTTTCTGTCCTCTATGTCAATCCTCCAAATTTATCGGCATGGAGGTCTACATGTAA 1026 0.4454 MTFPQHHFQRHYQAQQQQPQTKSFRNLQTIDGQMSQQVAFYSPTDLQDQPQHPPYIPPFHVVGFAPGPVPPADGSDGGVDLQLQWNYGLEPERKRLKEQDFLENNSQISSVDFHQPRSVSTGLGLSLDNTRLTSTGDLALLSLIGDDIERELQQQDVEIDRFLKVQGERLRQTILEKVQATQLQSVSLIEDKVLQKLREKEAEVESINKRNMELEDRMEQLTVEVGTWQQRARYNENMIAALKFNLQQAYVQSRDSKEGCGDSEVDDTASCCNDRSLDFHLLSKENTDVKEMMTCKACRVNEVTMVLLPCKHLCLCKDCESKLSFCPLCQSSKFIGMEVYM 341
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cca05g00162 341 Coils Coil 190 231 - -
Cca05g00162 341 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 280 341 IPR013083 -
Cca05g00162 341 Pfam Zinc finger, C3HC4 type (RING finger) 293 331 - -
Cca05g00162 341 PANTHER SBP (S-RIBONUCLEASE BINDING PROTEIN) FAMILY PROTEIN 1 341 IPR017066 -
Cca05g00162 341 PANTHER F2G19.2 1 341 - -
Cca05g00162 341 ProSiteProfiles Zinc finger RING-type profile. 295 330 IPR001841 -
Cca05g00162 341 PIRSF SBP1_RNase_bind 2 341 IPR017066 -
Cca05g00162 341 MobiDBLite consensus disorder prediction 1 23 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Cca05g00162 Cca-Chr5 3664891 3669956 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Cca05g00162 283 331 Miscellaneous Gene Families AT4G39050 40.816 3.15e-07 50.4
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Cca05g00162 05 3664891 3669956 Cca05g00162 05 3664891 3669956 ECH