Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cca05g00161 ATGGCTGGTGACAACATGCACCAACCACAGCCATCATTAGGGAGAGCCTTGCCTCCTGATTCAGAAGAGTTCTCATCCTTGTTCAACCAACTCCTCCACAACTCAATGGACCCGAATCATTCACCTTCTGATTTCACCACCACTGTTCCTTCTTCTCCCTCAAATTTCCATTTCTCTCACCCCCATCATTACAACATCACTGCCTCTCATGCCAACACCTTCAAACAACACAACAATCACACCCCTGATTTCCCTTCTGCTCCTGAGAAGAGTGTGGAGGCATCGAAACCTGTCCCACCACCACGTTCTTCGTCAAAGAGGAGTAGAGCTGCAGAGTTCCATAATTTGTCTGAAAAGAGAAGAAGGAGCAGGATTAACGAGAAAATGAAAGCCTTGCAGAATTTAATTCCGAATTCTAACAAGACAGACAAAGCTTCAATGCTAGATGAGGCCATAGAATATTTAAAGCAGCTTCAACTTCAAGTGCAAATGTTAATGATGAGAAATGGCTTGAGCTTGCATCCAATGTCTTTGCCAGGAGGACTACGACCTATGATAATGCCTCAGACTGGGTTGAACCTTGATGCGGGTAATGAACTTCAGAATTGTACCAGTGCAATTGCCTCATCTTCAAATGATGAAAGCTTGGTGCGGCATGCTTTTAGTTTTCCAAAGCAATGCAGCATCTCAAATCAGTCTCTTGGGGCACCCTCAATGACAAACGTAGCTGCTTCTGATACCTCATCCACTTTCCATCCCTCTATTAAGGATGCACTCTACGGCAACATGCCACAATTGTTTATGGACACAACAAAGATTGGAAAGCCCCCTTCTCCAGACGTGTCTTAA 849 0.4464 MAGDNMHQPQPSLGRALPPDSEEFSSLFNQLLHNSMDPNHSPSDFTTTVPSSPSNFHFSHPHHYNITASHANTFKQHNNHTPDFPSAPEKSVEASKPVPPPRSSSKRSRAAEFHNLSEKRRRSRINEKMKALQNLIPNSNKTDKASMLDEAIEYLKQLQLQVQMLMMRNGLSLHPMSLPGGLRPMIMPQTGLNLDAGNELQNCTSAIASSSNDESLVRHAFSFPKQCSISNQSLGAPSMTNVAASDTSSTFHPSIKDALYGNMPQLFMDTTKIGKPPSPDVS 282
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cca05g00161 282 PANTHER TRANSCRIPTION FACTOR PIF1-RELATED 22 257 IPR031066 -
Cca05g00161 282 MobiDBLite consensus disorder prediction 23 62 - -
Cca05g00161 282 MobiDBLite consensus disorder prediction 1 62 - -
Cca05g00161 282 ProSiteProfiles Myc-type, basic helix-loop-helix (bHLH) domain profile. 109 158 IPR011598 GO:0046983
Cca05g00161 282 SMART finulus 115 164 IPR011598 GO:0046983
Cca05g00161 282 MobiDBLite consensus disorder prediction 74 123 - -
Cca05g00161 282 CDD bHLH_AtPIF_like 109 171 - -
Cca05g00161 282 SUPERFAMILY HLH, helix-loop-helix DNA-binding domain 106 169 IPR036638 GO:0046983
Cca05g00161 282 Pfam Helix-loop-helix DNA-binding domain 113 159 IPR011598 GO:0046983
Cca05g00161 282 Gene3D - 104 168 IPR036638 GO:0046983
Cca05g00161 282 MobiDBLite consensus disorder prediction 107 123 - -
Cca05g00161 282 PANTHER TRANSCRIPTION FACTOR SPATULA 22 257 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Cca05g00161 Cca-Chr5 3645895 3650201 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Cca05g00161 109 266 Basic Helix-Loop-Helix Transcription Factor Gene Family AT4G36930 55.346 6.82e-40 140
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF bHLH Cca05g00161 HLH 2.5e-14 No_clan
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Cca05g00161 05 3645895 3650201 Cca05g00161 05 3645895 3650201 ECH