Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cca05g00160 ATGCAAGGGCAGAGAGGTACAATTGGTTCCCTGCCAGAAACCTTAGAATTTGATTGTGGATCTGCATCGAGTACTGCTACAGTTGATCAGCATATTTTCTGGAATAATATGCGGAATCCTGCAGAAAATCAATATGTACTTTCTCCTGGTGATATAAACCCACCCTATGTGAACTCTATAAACCATGAATGGCAGAACTTGAGTGGATGGAGCATAGGTGAGCCAAGTTCCAGTAATACACAGAATGAAGTTAACAACAATGAGCAGAAAAGAGAGCTAGGATTATCATCTTCAATAAGTTCTGGTGCTATAGCTGGTCCAAGACTTGAAGAAAGGCCCTTTGAACCAAACAGTACTTTTTCATTGGACAATGTCAATACAAGTCCTATGTATATGCGCAGCTCCAATTCTCACTTGGTGCCTCAGAATCTGAACTTAAATGCAAGTTTAGCAGATATTGGCAACGATAATAGCTATCATGTGGAGCATCCTCCCAACTTGAACAAGTCTAGTGGACCGGTAAATGAGCATATGCAACCTACAATTGGTTCTGGTCCTTTTCTGCTTCCTTCTGGAACTAATGGTTTTTTAGTTGAGGATACTGATGGTAGGCCAGGTTGTTCTGTAGACACCCGTCGTGTATCTTGCAAAAGAAAGGCTGTTGAACGCAATGTTGGACAGTCTTCTGACGGTGGAAGTTCTAGCTATAGTCAGCATACAGATGGTAGTACATGGAACACTCTTCCTACTCAGGATTATGGGGGGAGCAGTTTTAACAGATCTGTCCCAACAGAACAGGTAAATGCAAGACTTGGCCTGAGTACGGGGAATGGAGCCTCGGAAAGCATTCCTGAGTCAAATGTTGCAGGAAGCTCAGAAAACTTCCATAGAAATTTTCGTGTGAGGATAAATCCTTCAAGTCAACAAATTTCCGTTCCTCCCACTGCAATCTCAGGTGGGAATGTTATTAGGAACTCTGGTGTTTCTTCATCCTCTCCAATATTGCAACGATTTCATCCTATCGATAATTCTTTGGACTTGAGGCCTGTACCACCTGTTGATACTATGGTTCCTCAAAGTCAGCCCCTTGTTATTCACGTTCCTGCTTTACCAAGGAATGTGCAGTCATTCAGGTGGAGTGGTGGTTCCAGCTCAGCAAACAACCATTCATCAAACCCAGTTATATGCGCCGATAGAAATAGTCTACCAAACGAGGAAGCAAGCTCAAGAAGTATGCCTAGAAACATTATAGAATACCCAATGTTTGTGCCTGCAACCAATTTAAGAAATGTGGTTCGCAATCCAGCTAGAACTGCAAATAGTGCAAGTTTAAGTATACCTGGAAATGCTGGTTCTTCATCGCGGATTGGCCCAAATTCAGCTGTCAATCCACCATCAGCCTCACCTTGGGTTTCTCGCCCTAATCCTCAGCAGTATCCACGCAGGTTATCTGATTATGTTCGTCGGACCTTATTTTCTCCTGGTTTGGAAGCTGCTGGAAGTTCAAGCAATAATTACCCTTCCTTACGTGGTCCATCTGCTTCATCTGAATCAAGGGGACTGTCATCTGGGGTAAACCCATTTGAGAGGCCAGGTGATAGTGAATTTGGAATTCCATATTCTTTACGATCTTTAGCTGTTGTTGGTGAAGGAAGTAGTAGACTTGTATCTGAGCTCCGCAATGTGCTGGGCATCATGCGAAGGGGTGGGAACCTGCGATTTGAGGATGTTATGATCCTCGACCATTCAATGTTCTCTGGAATTGCCGATATTCATGATCGACACAGGGATATGCGTCTTGATGTTGACAACATGTCTTATGAGGAGTTATTGGCTCTGGAAGAACGCATTGGAAATGTGAGCACTGGATTGAGTGAGGAAACCATATTGAAACATCTGAAAAAGAAGAAGTATTCAGCTGAACCAGGTTCTCAGCATGAGGCAGAACCCTGCTGTGTTTGTCAGGAGGAGTATAAGGATGGAGATGGCATAGGATCACTGGATTGTGGGCATGATTACCATACCGAATGTATTAAACAGTGGCTAATGCATAAGAATTTGTGTCCCATTTGTAAGACAACGGGCTTGGCAACACGAGACTAG 2103 0.4341 MQGQRGTIGSLPETLEFDCGSASSTATVDQHIFWNNMRNPAENQYVLSPGDINPPYVNSINHEWQNLSGWSIGEPSSSNTQNEVNNNEQKRELGLSSSISSGAIAGPRLEERPFEPNSTFSLDNVNTSPMYMRSSNSHLVPQNLNLNASLADIGNDNSYHVEHPPNLNKSSGPVNEHMQPTIGSGPFLLPSGTNGFLVEDTDGRPGCSVDTRRVSCKRKAVERNVGQSSDGGSSSYSQHTDGSTWNTLPTQDYGGSSFNRSVPTEQVNARLGLSTGNGASESIPESNVAGSSENFHRNFRVRINPSSQQISVPPTAISGGNVIRNSGVSSSSPILQRFHPIDNSLDLRPVPPVDTMVPQSQPLVIHVPALPRNVQSFRWSGGSSSANNHSSNPVICADRNSLPNEEASSRSMPRNIIEYPMFVPATNLRNVVRNPARTANSASLSIPGNAGSSSRIGPNSAVNPPSASPWVSRPNPQQYPRRLSDYVRRTLFSPGLEAAGSSSNNYPSLRGPSASSESRGLSSGVNPFERPGDSEFGIPYSLRSLAVVGEGSSRLVSELRNVLGIMRRGGNLRFEDVMILDHSMFSGIADIHDRHRDMRLDVDNMSYEELLALEERIGNVSTGLSEETILKHLKKKKYSAEPGSQHEAEPCCVCQEEYKDGDGIGSLDCGHDYHTECIKQWLMHKNLCPICKTTGLATRD 700
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cca05g00160 700 SMART ring_2 651 691 IPR001841 -
Cca05g00160 700 ProSiteProfiles Zinc finger RING-type profile. 651 692 IPR001841 -
Cca05g00160 700 MobiDBLite consensus disorder prediction 497 530 - -
Cca05g00160 700 MobiDBLite consensus disorder prediction 497 523 - -
Cca05g00160 700 CDD RING-H2_TTC3 650 692 - -
Cca05g00160 700 PANTHER E3 UBIQUITIN-PROTEIN LIGASE MBR2-LIKE ISOFORM X1 1 697 - -
Cca05g00160 700 MobiDBLite consensus disorder prediction 439 479 - -
Cca05g00160 700 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 614 695 IPR013083 -
Cca05g00160 700 MobiDBLite consensus disorder prediction 226 261 - -
Cca05g00160 700 SUPERFAMILY RING/U-box 643 694 - -
Cca05g00160 700 MobiDBLite consensus disorder prediction 272 291 - -
Cca05g00160 700 MobiDBLite consensus disorder prediction 379 410 - -
Cca05g00160 700 MobiDBLite consensus disorder prediction 208 224 - -
Cca05g00160 700 MobiDBLite consensus disorder prediction 208 261 - -
Cca05g00160 700 Pfam Ring finger domain 651 692 IPR001841 -
Cca05g00160 700 PANTHER E3 UBIQUITIN-PROTEIN LIGASE RNF165 1 697 IPR045191 GO:0061630
Cca05g00160 700 MobiDBLite consensus disorder prediction 71 98 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Cca05g00160 Cca-Chr5 3596754 3603198 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Cca05g00160 1 698 C3H Transcription Factor Family AT2G15530 32.063 3.75e-81 270
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Cca05g00160 05 3596754 3603198 Cca05g00160 05 3596754 3603198 ECH
Cca05g00160 05 3596754 3603198 Cca07g00454 07 6067547 6073607 PCT