Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cca05g00154 ATGGCGCAGATTCAGGTGCAGCATCAGAGTCCCGTTTCGACTCCTCCCAACGGCGTGGCTCCCGCCGCGCCGAACGCGAACCAGTTTGTTACGACGTCGTTGTACGTCGGCGATCTCGACTTCAATGTCAACGACTCGCAGCTCTACGATCTGTTCAACCAGGTCGGCCAAGTCGTTTCGGTGCGCGTCTGCAGGGACTTGACGACGCGTCGTTCACTCGGTTACGGCTATGTTAATTACAGTAACCCTCAGGATGCGGCGAGGGCATTGGATGTGCTGAATTTTACTCCACTGAACAACAAACATATTAGGATCATGTATTCTCATCGGGATCCTAGTATTCGGAAGAGTGGTACTGCGAATATTTTTATCAAGAATTTGGATAAGGCTATTGACCACAAGGCCTTACATGATACTTTTTCTTCTTTTGGACACATTCTTTCTTGCAAAATAGCAACTGATGGTTCTGGCCTGTCTAAAGGCTATGGTTTTGTTCAATTTGACAACGAAGAGTCTGCACAGAATGCTATTGACAAGTTGAATGGCATGCTGATCAATGATAAGCAGGTTTATGTAGGTCATTTCCTGCGAAAGCAAGATAGAGAGAATGCTCTCAGTAAGACAAAATTCAATAATGTCTATGTGAAAAACCTATCAGATTCAACCATGGATGAAGAGTTGAGGAAAATTTTCGGAGAATATGGAACCATTACTAGTGCTGTAGTAATGAGAGATGGAGAAGGTAAATCAAAGTGTTTTGGCTTTGTCAATTTTGAAAACCCTGACGATGCTGCAAAAGCTGTTGAGGAACTTAATGGGAAGAAATTTGACGACAAGGAGTGGTATGTTGGAAAAGCCCAGAAAAAATCTGAGCGAGAACTTGAATTGAAAGGACGATTTGAGCAGACTATAAAGGAATCTGCTGACAAATATCAAGGTGTGAACTTGTATCTGAAGAACTTGGATGATACCATCAGTGATGAAAAACTTAAAGAAATGTTCTTCGAGTTTGGAACAATAACTTCATGCAAGGTCATGCGAGACCCGAATGGAATTAGTAGAGGTTCAGGATTTGTTGCATTTTCAACTCCTGAGGAAGCATCTCGAGCTCTTGGGGAGATGAATGGTAAAATGATTTCTGGAAAACCTCTGTACGTTGCCCTGGCACAGAGAAAAGAAGAGAGAAGAGCAAGGTTACAGGCACAATTTTCTCAAATGAGGCCTGTTGCAATTACACCTTCTGTTGCACCCCGCATGCCTCTCTACCCACCTGGTGCTCCTGGTCTTGGCCAACAGTTTTTGTATGGGCAAGGACCCCCTGCTATGATGCCTCCACAAGCTGGATTTGGTTACCAGCAGCAACTAGTTCCTGGAATGAGACCTGGTGGTGCTCCCATTCCAAGCTTCTTTGTTCCTATGGTTCAGCAGGGCCAACAAGGGCAGCGCCCAGGGGGACGCCGAGGAGCGGGTCCTGTACAACAACCCCAGCAGCCAGTGCCTATGATGCAGCAGCAGATGCTTCCAAGGGGACGTGTCTACCGTTACCCACCTGGCCGCAACATGCAAGATGTCCCTCTTCCAGTAGCTGCTGGTGGAATGCTGTCTGTCCCATATGACATGGGTGGTATGCCAATGCGTGATACTGTGGGACAGCCAATGCCCATTCAAGCTTTGGCTACAGCTCTCGCTAATGCCCCACCTGAACAGCAGAGGACTATGCTTGGCGAAGCGTTATACCCGCTTGTGGATCAGCTGGAACATGATGCAGCAGCAAAGGTTACAGGCATGCTTTTGGAGATGGACCAGCCTGAGGTATTGCATCTAATTGAGTCACCAGATGCTCTGAAGGCAAAAGTAGCTGAAGCCATGGATGTTTTGAGGAATGTTGCTCAGCAGCAAGCCAGCAGTCCAGCTGATCAACTAGCTTCACTCTCTCTCAATGACAATCTTGTCTCTTAG 1959 0.4681 MAQIQVQHQSPVSTPPNGVAPAAPNANQFVTTSLYVGDLDFNVNDSQLYDLFNQVGQVVSVRVCRDLTTRRSLGYGYVNYSNPQDAARALDVLNFTPLNNKHIRIMYSHRDPSIRKSGTANIFIKNLDKAIDHKALHDTFSSFGHILSCKIATDGSGLSKGYGFVQFDNEESAQNAIDKLNGMLINDKQVYVGHFLRKQDRENALSKTKFNNVYVKNLSDSTMDEELRKIFGEYGTITSAVVMRDGEGKSKCFGFVNFENPDDAAKAVEELNGKKFDDKEWYVGKAQKKSERELELKGRFEQTIKESADKYQGVNLYLKNLDDTISDEKLKEMFFEFGTITSCKVMRDPNGISRGSGFVAFSTPEEASRALGEMNGKMISGKPLYVALAQRKEERRARLQAQFSQMRPVAITPSVAPRMPLYPPGAPGLGQQFLYGQGPPAMMPPQAGFGYQQQLVPGMRPGGAPIPSFFVPMVQQGQQGQRPGGRRGAGPVQQPQQPVPMMQQQMLPRGRVYRYPPGRNMQDVPLPVAAGGMLSVPYDMGGMPMRDTVGQPMPIQALATALANAPPEQQRTMLGEALYPLVDQLEHDAAAKVTGMLLEMDQPEVLHLIESPDALKAKVAEAMDVLRNVAQQQASSPADQLASLSLNDNLVS 652
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cca05g00154 652 Pfam RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) 34 104 IPR000504 GO:0003723
Cca05g00154 652 Pfam RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) 213 281 IPR000504 GO:0003723
Cca05g00154 652 Pfam RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) 122 190 IPR000504 GO:0003723
Cca05g00154 652 Pfam RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) 316 384 IPR000504 GO:0003723
Cca05g00154 652 ProSiteProfiles Poly(A)-binding protein C-terminal (PABC) domain profile. 554 631 IPR002004 GO:0003723
Cca05g00154 652 SUPERFAMILY RNA-binding domain, RBD 208 298 IPR035979 GO:0003676
Cca05g00154 652 ProSiteProfiles Eukaryotic RNA Recognition Motif (RRM) profile. 32 110 IPR000504 GO:0003723
Cca05g00154 652 ProSiteProfiles Eukaryotic RNA Recognition Motif (RRM) profile. 211 288 IPR000504 GO:0003723
Cca05g00154 652 CDD RRM2_I_PABPs 118 194 IPR045305 -
Cca05g00154 652 SUPERFAMILY RNA-binding domain, RBD 309 407 IPR035979 GO:0003676
Cca05g00154 652 TIGRFAM PABP-1234: polyadenylate binding protein, human types 1, 2, 3, 4 family 33 627 IPR006515 GO:0003723
Cca05g00154 652 Pfam Poly-adenylate binding protein, unique domain 562 626 IPR002004 GO:0003723
Cca05g00154 652 PANTHER POLYADENYLATE-BINDING PROTEIN 21 636 - -
Cca05g00154 652 SUPERFAMILY PABC (PABP) domain 496 645 IPR036053 GO:0003723
Cca05g00154 652 MobiDBLite consensus disorder prediction 1 21 - -
Cca05g00154 652 CDD RRM1_I_PABPs 33 112 - -
Cca05g00154 652 ProSiteProfiles Eukaryotic RNA Recognition Motif (RRM) profile. 120 197 IPR000504 GO:0003723
Cca05g00154 652 Gene3D - 550 633 - -
Cca05g00154 652 MobiDBLite consensus disorder prediction 476 498 - -
Cca05g00154 652 SMART rrm2_1 212 284 IPR003954 GO:0003676
Cca05g00154 652 SMART rrm2_1 33 106 IPR003954 GO:0003676
Cca05g00154 652 SMART rrm2_1 121 193 IPR003954 GO:0003676
Cca05g00154 652 SMART rrm2_1 315 387 IPR003954 GO:0003676
Cca05g00154 652 CDD RRM3_I_PABPs 210 289 - -
Cca05g00154 652 ProSiteProfiles Eukaryotic RNA Recognition Motif (RRM) profile. 314 391 IPR000504 GO:0003723
Cca05g00154 652 Gene3D - 300 400 IPR012677 -
Cca05g00154 652 CDD RRM4_I_PABPs 313 391 - -
Cca05g00154 652 PANTHER RNA BINDING PROTEIN 21 636 - -
Cca05g00154 652 SMART rrm1_1 33 106 IPR000504 GO:0003723
Cca05g00154 652 SMART rrm1_1 212 284 IPR000504 GO:0003723
Cca05g00154 652 SMART rrm1_1 315 387 IPR000504 GO:0003723
Cca05g00154 652 SMART rrm1_1 121 193 IPR000504 GO:0003723
Cca05g00154 652 SUPERFAMILY RNA-binding domain, RBD 32 201 IPR035979 GO:0003676
Cca05g00154 652 SMART poly_2 566 629 IPR002004 GO:0003723
Cca05g00154 652 Gene3D - 116 200 IPR012677 -
Cca05g00154 652 Gene3D - 1 115 IPR012677 -
Cca05g00154 652 Gene3D - 201 299 IPR012677 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Cca05g00154 Cca-Chr5 3520492 3527140 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Cca05g00154 1 647 Eukaryotic Initiation Factors Gene Family AT4G34110 68.865 0.0 875
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Cca05g00154 05 3520492 3527140 Cca05g00154 05 3520492 3527140 ECH