Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cca05g00153 ATGAAGGTGCATCAGTTCGCACGTGGATTCTGGGAGCACGAACCCTCCCTCACACTTGGGTGCAAACGTTTACGACCCCTTGCTCCCAAACTTTCCTACACCGACACCAATACTACACCTTTCGACCTCAAGAGCTTCATCAAACCTGAAAGTGCCTCCAGAAAACTTGGATCCTCTGATGATAACAAAAGAGACCCACCTTCACCTCATGCGCATGCCCAGGTGGAAACGCATATTTCAGGAGGGACACGGTGGAATCCGACGCAAGAACAGATAGGGATATTGGAGATGCTGTACAGAGGAGGGATGAGAACACCAAATGCTCAACAAATAGAGCAGATCACGGTTCAGCTTAGCAAGTACGGGAAGATCGAAGGGAAGAACGTGTTCTATTGGTTCCAAAACCACAAAGCACGCGAGAGACAAAAGCAGAAGCGTAACAACCTAGGCCTTGCTCACAGTCCTCGTACTCCCACCACACTATGGTCTCCTCCCTTTAGTTGCAGTGTGATAACTAGTTTGGATTCCACAAAGCGGGATGAAGTAGTAGATGAAAGAGAGGAGGAAGATAGTCCGTTGAAGAAGTGTAGGAGTTGGGCATTTGAGTACTCAGAAGACCAAAGTTGGTCATCGCAGAAAGAGGAGGGACATAGAACTCTAGAGCTTTTCCCATTGCACCCGGAAGGCAGATGA 693 0.4848 MKVHQFARGFWEHEPSLTLGCKRLRPLAPKLSYTDTNTTPFDLKSFIKPESASRKLGSSDDNKRDPPSPHAHAQVETHISGGTRWNPTQEQIGILEMLYRGGMRTPNAQQIEQITVQLSKYGKIEGKNVFYWFQNHKARERQKQKRNNLGLAHSPRTPTTLWSPPFSCSVITSLDSTKRDEVVDEREEEDSPLKKCRSWAFEYSEDQSWSSQKEEGHRTLELFPLHPEGR 230
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cca05g00153 230 Pfam Homeodomain 83 142 IPR001356 GO:0003677
Cca05g00153 230 SUPERFAMILY Homeodomain-like 82 147 IPR009057 -
Cca05g00153 230 MobiDBLite consensus disorder prediction 54 71 - -
Cca05g00153 230 ProSiteProfiles 'Homeobox' domain profile. 88 143 IPR001356 GO:0003677
Cca05g00153 230 Gene3D - 82 149 - -
Cca05g00153 230 MobiDBLite consensus disorder prediction 204 230 - -
Cca05g00153 230 CDD homeodomain 83 144 IPR001356 GO:0003677
Cca05g00153 230 PANTHER WUSCHEL-RELATED HOMEOBOX 4 1 230 IPR044186 GO:0003700|GO:0010067|GO:0010087|GO:0051301
Cca05g00153 230 MobiDBLite consensus disorder prediction 208 230 - -
Cca05g00153 230 MobiDBLite consensus disorder prediction 50 85 - -
Cca05g00153 230 SMART HOX_1 80 147 IPR001356 GO:0003677
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Cca05g00153 Cca-Chr5 3511683 3514101 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Cca05g00153 1 173 Wox Gene Family AT1G46480 57.895 1.54e-62 192
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF HB-WOX Cca05g00153 Homeodomain 1.4e-18 CL0123
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Cca05g00153 05 3511683 3514101 Cca05g00153 05 3511683 3514101 ECH