Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cca05g00149 ATGGGCCAAGTGATACATGTTGCGGTGGTGGCAGCCTCCTTGGGATGTGTTTCAACCCTTTTGCTGGTTTTCATGTGGCGTTGGTGCCACCACAAGAAAGAGCATAGAAACTTTGTGGAAGCCAATAGCTTGACCAGAATGGAGGCCCTCCAAGCAGGAATTGCAAAACTTCATCACCAATTTGATCACAAGAGCAAAAACAAAGGCAACAACTTTTATGTGTTCCACAATGGGGTATCTAGAAGAGGACATTTGTTTAACTGGGATGATCACCCCTACCTTGTAGTTGATGCTGTGGAAAATGGGTGGTCTAGATTTGCTTTTACCAACTACAAAAGCAACATGGCAACTCCTTCAAAGAGATCAACAGCAACCCTTTTAGGAGCATGTGCAGCTGGTGAAAATGGAAGAGAATCTGAGGCTGAGATTAGCTGGGAAGTGTGTAATGGATCAGCTGAATATATGCAGAAGATTAGGCTCAATCCTGGGTTGAAATTGAAAAAGGTTCTTCACACAAACAACTCTTCTTCCATGATTGTTGCTTCTGTCATTAGGACTTCTCTACCTCTTCCTGGCCCTGCTTTGGGGAACCATGCTTTCCCACAAGAGGCCTATTTTGAAATTACCATCTTGTGTTCACGTGTTGGTGATCATGAATCGGTTGGAAAGAGAGAAGGGGAGAAGACAAAACTCCTTGTTGAAGATGGTTCAAATGGTGTAGCTGGAGGGGGTGTTCCTTTGAGAGTTCCAGGTAGCTACCCTCGCAGCATTGGGTTCAACTCCAATGGTTCTGTTTTTCTTGAAGGAATGAAACTTGTGACGGAGTCTGAGAAGGCACAATGGGTAGGAAGGGATAGGGTAATTGGGTGCGGATTTGATCCGAGGCACAAAAAGGTTTTCTTCACATTGGACTCAGAGTTGGTGCATGTCATTCACTGCCAGTCAGAGGAATTTGCCACTCCACTGTGTCCAACTTTGGCTGCAAATATAGACATTTTGGTTTTGGTCAATTTTGGACAAAGTGCATTCAAATATGCACCTGCAAATGCACAAAGAACACCAAATCCATGCTTCGTAGCCCCACTTGTAAATTCCCCTGGTGCCACCCTTGGCTATGATGACAGCAAGGAGCTCTTCTCCATGGGAAGGATTGATTCTCAGTGGCTTAACAGATCTGCAAACAAAGGAAACCACCCCAATGGGAATAATACTCTAGTCTTGGATTTTGATGAGTCTGAGGCTGATCTATTTGAAATAGTCTTAGATGGTTCAGAAAAGTCTCAAGACATAGTGTCATAG 1299 0.4419 MGQVIHVAVVAASLGCVSTLLLVFMWRWCHHKKEHRNFVEANSLTRMEALQAGIAKLHHQFDHKSKNKGNNFYVFHNGVSRRGHLFNWDDHPYLVVDAVENGWSRFAFTNYKSNMATPSKRSTATLLGACAAGENGRESEAEISWEVCNGSAEYMQKIRLNPGLKLKKVLHTNNSSSMIVASVIRTSLPLPGPALGNHAFPQEAYFEITILCSRVGDHESVGKREGEKTKLLVEDGSNGVAGGGVPLRVPGSYPRSIGFNSNGSVFLEGMKLVTESEKAQWVGRDRVIGCGFDPRHKKVFFTLDSELVHVIHCQSEEFATPLCPTLAANIDILVLVNFGQSAFKYAPANAQRTPNPCFVAPLVNSPGATLGYDDSKELFSMGRIDSQWLNRSANKGNHPNGNNTLVLDFDESEADLFEIVLDGSEKSQDIVS 432
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cca05g00149 432 PANTHER SPLA/RYANODINE RECEPTOR (SPRY) DOMAIN PROTEIN 241 427 - -
Cca05g00149 432 PANTHER RAN BINDING PROTEIN 9-RELATED 241 427 - -
Cca05g00149 432 PANTHER RAN BINDING PROTEIN 9-RELATED 2 240 - -
Cca05g00149 432 PANTHER SPLA/RYANODINE RECEPTOR (SPRY) DOMAIN PROTEIN 2 240 - -
Cca05g00149 432 Gene3D - 156 353 IPR043136 -
Cca05g00149 432 CDD SPRY_RanBP_like 196 339 IPR044736 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Cca05g00149 Cca-Chr5 3411592 3413937 Dispersed/Wgd
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Cca05g00149 05 3411592 3413937 Cca05g00149 05 3411592 3413937 ECH
Cca05g00149 05 3411592 3413937 Cca07g00473 07 6396261 6398995 PCT