Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cca05g00147 ATGGTGGAAGCAAGTGAAGATTGTTGCGTGAAGGTGGCGGTACACGTGCGACCGCTCATCAGCGAGGAGAAGCTTCAGGGATGCAAGGATTGCGTCACCGTCGTGCCAGGGAAGCCTCAGGTACAAATTGGTGCACATTCCTTTACATTTGATCATGTTTATGGGAGCACTGGTTCTCCCTCATCTGCCATGTTCGATGAATGTGTTGCTTCCCTTGTCGATGGTTTGTTCCAAGGATATAATGCTACTGTTCTCGCATATGGTCAGACAGGTTCTGGGAAAACATACACCATGGGCACTGGCTTTAAAGATGGTTATCAAGAGGGAATAATACCCCAAGTTATGAGTTCCTTGTTTAAAAAAATTGAGACCTCAAAGCATCAGATTGAATTTCAGTTGCATGTTTCCTTTATTGAGATTCTTAAAGAAGAAGTAAGAGACTTGCTGGACCCATCCTCTATGAACAAACCAGAAACTGCAAATGGACATGCAGGGAAAGTGACTAGTCCCGGGAAACCACCAATACAAATTCGTGAGTCATCAAATGGTGTCATTACTCTAGCAGGATCCACTGAAGTCAGTGTTACAACGCTAAAAGAAATGGCTGCTTGCCTAGAACAAGGATCAATGAGTAGAGCAACTGGAAGCACAAATATGAACAACCAATCCAGTCGTTCACATGCTATCTTCACCATCACATTAGAGCAAATGCGGAAGCTCAATAGTCCTAGTGAGATCAGTTTAAATGATACAATGAATGAAGAATATCTTTGTGCCAAGTTGCACTTGGTAGATCTTGCTGGATCAGAACGAGCTAAAAGAACGGGGTCTGATGGTCTACGTTTTAAGGAAGGAGTTCACATTAACAAAGGCCTTCTAGCGCTCGGCAATGTTATTAGTGCACTTGGTGATGAAAAGAAGAGAAAAGAAGGGGTTCATGTTCCTTATAGGGATAGTAAACTTACTAGGCTTTTGCAGGATTCACTTGGCGGTAACAGCAGAACGGTTATGATAGCCTGCATAAGTCCTGCTGATATTAATGCCGAGGAAACACTTAACACTTTGAAGTATGCAAATCGTGCACGTAACATCCAAAATAAGCCTGTTGTCAATAGAGATCCCATGTCCAACGAAATGCTAAAAATGCGACAACAGCTTGAGTATTTGCAAGCAGAACTTTGTTCTCGTTCTGGTGGCTCTTCTGAGGAAGTTCAGGTCCTCAAGGAAAGGATTTCTTGGCTTGAAGCAGCCAATGAGGATCTTCGATGTGAACTTCATGAATACCGTAGTAGATGCTCTGGTGTAGAACAATGTGAAAAGGATTCTTATGATAATAGCACATGTAATGTAAAGGCTGATGGGGTTAAGAGGAGCTTACCTATCACAGCCTCTGATTATCCAATGAGTGAAACAACAGGAGATTCAAGGGAAATTGAAGAAGTAGCAAAAGAGTGGGAGCATAATCTTCTGCAAAATAGTATGGACAGAGAATTACATGAATTGAATAAACGCTTGGAGCAAAAAGAGTCTGAGATGAAGCTTTTTGGAATGTCTGATGCTGAAACACTCAAGCAGCACTTTGGCAGGAAGATAATGGAACTGGAAGATGAGAAAAGAGTTGTGCAGCGAGAGCGGGATCGTCTTTTGGCTGAAGTTGAAAATCTTGCTGCCAATTCTGATGGACAAACGCAGAAATCTGAGGATATCCATGCCCAAAAATTGAAAACACTTGAAGCCCAAATTCTGGATCTGAAGAAGAAACAGGAGAGTCAGGTCCAGCTTTTGAAGCAAAAGCAAAAAAGTGATGAAGCAGCGAAGCGATTGCAAGATGAAATACAATCTATAAAGGCCCAAAAGGTTCAACTGCAACAAAGGATAAAACAAGAGGCCGAACAATTTCGGCAATGGAAGGCTTCTAGAGAGAAAGAGCTGCTGCAATTAAAGAAGGAAGGAAGGAGAAATGAATTTGAACGGCATAAGCTGCAAGCTTTAAATCAGCGCCAGAAAATGGTCCTTCAGAGGAAGACTGAAGAAGCTGCAATGGCCACCAAGAGGTTAAAGGAGCTGTTAGAAGCTCGTAAATCTTCCAGTCGAGACACTTCAGTTGCAACGAACGGAAGTGGAACAAATGGACAGAGCAATGAGAAGTCCTTGCAACGGTGGCTTGATCACGAGCTGGAAGTCATGGTAAAAGAGCATGAAGTTCGTTTTGAGTATGAGAAGCAGAGCCACGTGCGAGCTGCCCTTGCAGAGGAATTAGCCATGCTAAAGCAAGTAAGCGAGTTTGCTGCCAAGGGTCTCAGTCCTCCAAGAGGAAAGAATGGATTTGCCAGAGCATCCTCCATGTCACCAAATGCAAGAATGGCTAGAATAGCTTCACTCGAGAGCATGCTGATCATATCGTCTAATTCACTGGTGGCAATGGCTTCTCAACTTTCTGAGGCAGAAGAACGAGAAAGGGCCTTCACTAATCGTGGACGCTGGAACCAATTACGCTCAATGGGAGAAGCCAAGAATTTGCTTCAATATTTGTTCAATTCCGTTGGAGATGCTAGGTGCCAACTGTGGGAGAAGGACACCGAGATCAAGGAAATGAAAGATCAAATCAAAGAACTTGTAGGTCTATTACGGCAAAGTGAAATCAAGAGAAAGGAAGCTGAGAAGGAACTAAAAGTGAGAGAGCAAGCTGTTGCAACCACATTGGCTACGCCAACTTCTGGAAACTCTCCTAATTCATTGAAACACTATGCGGAAGACATCAGGGAAACTTTATCTCCGGAGTCTGTGCCAGTACAGAAACAGCGCAAATATATGCCAGGCATCACTAATGGCCAAGTGAGGGAATCAGCAGCATTTATAGATCAGAGTAGAAGGATGGTACCCATTGGGCATCTGTCAATGAAAAAACTGGCAATTGTAGGACAAGCTTCTGGCAAGCTATGGCGGTGGAAAAGAAGCCACCATCAGTGGCTACTACAATTCAAATGGAAGTGGCAAAAGCCATGGAAAATTTCTGAATTGATTCGACACAGTGATGAGACAATCATGAGAGCAAGGCCAAGATCGCAGACTTTGCCACGTATCATGTGA 3090 0.434 MVEASEDCCVKVAVHVRPLISEEKLQGCKDCVTVVPGKPQVQIGAHSFTFDHVYGSTGSPSSAMFDECVASLVDGLFQGYNATVLAYGQTGSGKTYTMGTGFKDGYQEGIIPQVMSSLFKKIETSKHQIEFQLHVSFIEILKEEVRDLLDPSSMNKPETANGHAGKVTSPGKPPIQIRESSNGVITLAGSTEVSVTTLKEMAACLEQGSMSRATGSTNMNNQSSRSHAIFTITLEQMRKLNSPSEISLNDTMNEEYLCAKLHLVDLAGSERAKRTGSDGLRFKEGVHINKGLLALGNVISALGDEKKRKEGVHVPYRDSKLTRLLQDSLGGNSRTVMIACISPADINAEETLNTLKYANRARNIQNKPVVNRDPMSNEMLKMRQQLEYLQAELCSRSGGSSEEVQVLKERISWLEAANEDLRCELHEYRSRCSGVEQCEKDSYDNSTCNVKADGVKRSLPITASDYPMSETTGDSREIEEVAKEWEHNLLQNSMDRELHELNKRLEQKESEMKLFGMSDAETLKQHFGRKIMELEDEKRVVQRERDRLLAEVENLAANSDGQTQKSEDIHAQKLKTLEAQILDLKKKQESQVQLLKQKQKSDEAAKRLQDEIQSIKAQKVQLQQRIKQEAEQFRQWKASREKELLQLKKEGRRNEFERHKLQALNQRQKMVLQRKTEEAAMATKRLKELLEARKSSSRDTSVATNGSGTNGQSNEKSLQRWLDHELEVMVKEHEVRFEYEKQSHVRAALAEELAMLKQVSEFAAKGLSPPRGKNGFARASSMSPNARMARIASLESMLIISSNSLVAMASQLSEAEERERAFTNRGRWNQLRSMGEAKNLLQYLFNSVGDARCQLWEKDTEIKEMKDQIKELVGLLRQSEIKRKEAEKELKVREQAVATTLATPTSGNSPNSLKHYAEDIRETLSPESVPVQKQRKYMPGITNGQVRESAAFIDQSRRMVPIGHLSMKKLAIVGQASGKLWRWKRSHHQWLLQFKWKWQKPWKISELIRHSDETIMRARPRSQTLPRIM 1029
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cca05g00147 1029 SMART kinesin_4 7 372 IPR001752 GO:0003777|GO:0005524|GO:0007018|GO:0008017
Cca05g00147 1029 PANTHER CHROMOSOME-ASSOCIATED KINESIN KIF4A-RELATED 1 1029 - -
Cca05g00147 1029 CDD KISc_KIF4 8 365 - -
Cca05g00147 1029 Gene3D Kinesin motor domain 2 392 IPR036961 -
Cca05g00147 1029 PRINTS Kinesin heavy chain signature 79 100 IPR001752 GO:0003777|GO:0005524|GO:0007018|GO:0008017
Cca05g00147 1029 PRINTS Kinesin heavy chain signature 217 234 IPR001752 GO:0003777|GO:0005524|GO:0007018|GO:0008017
Cca05g00147 1029 PRINTS Kinesin heavy chain signature 260 278 IPR001752 GO:0003777|GO:0005524|GO:0007018|GO:0008017
Cca05g00147 1029 PRINTS Kinesin heavy chain signature 314 335 IPR001752 GO:0003777|GO:0005524|GO:0007018|GO:0008017
Cca05g00147 1029 Coils Coil 672 692 - -
Cca05g00147 1029 Coils Coil 862 896 - -
Cca05g00147 1029 MobiDBLite consensus disorder prediction 696 716 - -
Cca05g00147 1029 MobiDBLite consensus disorder prediction 156 178 - -
Cca05g00147 1029 Pfam Kinesin motor domain 17 364 IPR001752 GO:0003777|GO:0005524|GO:0007018|GO:0008017
Cca05g00147 1029 Coils Coil 404 431 - -
Cca05g00147 1029 ProSiteProfiles Kinesin motor domain profile. 9 364 IPR001752 GO:0003777|GO:0005524|GO:0007018|GO:0008017
Cca05g00147 1029 Coils Coil 591 639 - -
Cca05g00147 1029 Coils Coil 567 587 - -
Cca05g00147 1029 PANTHER CHROMOSOME-ASSOCIATED KINESIN KIF4A-LIKE PROTEIN 1 1029 - -
Cca05g00147 1029 ProSitePatterns Kinesin motor domain signature. 259 270 IPR019821 GO:0003777|GO:0005524|GO:0007018
Cca05g00147 1029 Coils Coil 517 558 - -
Cca05g00147 1029 Coils Coil 491 511 - -
Cca05g00147 1029 MobiDBLite consensus disorder prediction 690 716 - -
Cca05g00147 1029 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 10 395 IPR027417 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Cca05g00147 Cca-Chr5 3353725 3366285 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Cca05g00147 10 390 Miscellaneous Gene Families AT5G06670 37.150 1.72e-54 201
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Cca05g00147 05 3353725 3366285 Cca05g00147 05 3353725 3366285 ECH
Cca05g00147 05 3353725 3366285 Cca07g00474 07 6423764 6435736 PCT