Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cca05g00145 ATGCCAAAAAAATTGTTGCTCACATCTTTGTGCATCCTCTTTCTGTCCCTTCCAATCCACATGTCACCACCACATGATGTCAGAGTCGCACAAAATTTCAGAACTAGTAGTGGCCACAGGACCAAAGGTGGTGGTGGTGGTTCATCCAAAGGTTGCCACAACAACAAATTGGACGcaacaccaacaccatgtcaaaattcaacaaccattcaagcagttccaactccaagtccaacttcaCCCCCTCTTGTTTTTGCAGACCAAAGACTTGAAGTGGTGTATCCAATAATCCAAAAATTCAAGTCCCTCATCACCTCAGATCCACTAGGAGTGACCAGAACTTGGGTTGGATCAGATATATGCAGCTACAAGGGCTTCTACTGTGACACCCCACCAGACAACAATTCTGCCACTGCTTTGGCCTCTATTGACTTCAATGGTTTTCAACTATCTGCTTCCACTCTTGATGGCTTCATTGACAACCTCCCTGATATTGCTCTCTTCCATGCAAACTCCAATAACTTTGGTGGCACAATCTCACCAAAAATCTCCAAGCTCCCTTACCTCTATGAGATTGATGTTAGCAACAACCGATTAACCGGTCCATTTCCCTCTGCTGTTCTAGGCATGAGCACTTTAACATTCTTGGACATAAGGTTCAATTTCTTCTCTGGGGCAGTTCCACCACAAGTATTCACACAGAACCTTCAAGTCCTTTTCATAAACAACAATATTTTCACTCAAGGGTTGCCTGATGATTTAGGCTCCACTCATATTCTCTTGCTCACTTTGGCAAACAACAAGTTCATGGGTCCAATCCCAAGAAGCCTTCCCAAAGCACTAGCCACTCTCACTGAGGTGTTGCTACTCAACAACCAGTTAACCGGCTGCTTGCCCTATGAGATTGGTTTTCTTGAAGAGGCCACAGTGTTTGATGTTGGCAACAACATGTTGACAGAAGTGGTGTGCGCAGGGTTGGTGAACTTGGTCAACTTTTCATTATCAGATAACTATTTCACTCATGTGGGGCCACTGTGTAGGATGCTGATTCAGAGAGGGGTTCTTGATGTTAGGAACAATTGTGTTCCTGATCTTCCCTTTCAGAGATCAGTGGTTGAGTGTGCTGAGTTCTTTGCAACACCAAGGATGTGTCCATTCATGTGGTTTCATAGTCTCATCCCTTGTAAGCTTCCATTTCAACATTCCATTCCTTAG 1215 0.4198 MPKKLLLTSLCILFLSLPIHMSPPHDVRVAQNFRTSSGHRTKGGGGGSSKGCHNNKLDATPTPCQNSTTIQAVPTPSPTSPPLVFADQRLEVVYPIIQKFKSLITSDPLGVTRTWVGSDICSYKGFYCDTPPDNNSATALASIDFNGFQLSASTLDGFIDNLPDIALFHANSNNFGGTISPKISKLPYLYEIDVSNNRLTGPFPSAVLGMSTLTFLDIRFNFFSGAVPPQVFTQNLQVLFINNNIFTQGLPDDLGSTHILLLTLANNKFMGPIPRSLPKALATLTEVLLLNNQLTGCLPYEIGFLEEATVFDVGNNMLTEVVCAGLVNLVNFSLSDNYFTHVGPLCRMLIQRGVLDVRNNCVPDLPFQRSVVECAEFFATPRMCPFMWFHSLIPCKLPFQHSIP 404
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cca05g00145 404 Gene3D Ribonuclease Inhibitor 96 258 IPR032675 -
Cca05g00145 404 Gene3D Ribonuclease Inhibitor 259 371 IPR032675 -
Cca05g00145 404 MobiDBLite consensus disorder prediction 36 57 - -
Cca05g00145 404 PANTHER LEUCINE-RICH REPEAT EXTENSIN-LIKE PROTEIN 3-RELATED 317 402 - -
Cca05g00145 404 PANTHER LEUCINE-RICH REPEAT EXTENSIN-LIKE PROTEIN 3-RELATED 7 319 - -
Cca05g00145 404 SUPERFAMILY L domain-like 98 361 - -
Cca05g00145 404 PANTHER BNAA09G53810D PROTEIN 317 402 - -
Cca05g00145 404 PANTHER BNAA09G53810D PROTEIN 7 319 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Cca05g00145 Cca-Chr5 3336725 3338023 Dispersed/Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Cca05g00145 81 381 Leucine-rich Repeat extension Gene Families AT3G24480 38.720 1.71e-69 225
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Cca05g00145 05 3336725 3338023 Cca05g00145 05 3336725 3338023 ECH