Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cca05g00142 ATGGCTTCTATTACATCAACAAACATGGCCATGCTGCTGCTGTTGGCGCTCTTCGCGCTTTCATCGGCCTCGGACATGTCCATAATCTCGTACGACAAGGGCCACGCCGACAAGGGCAGGTGGCGGAGCGACGAGGAAGTGATGTCGTTGTACGAGCAGTGGGTGATGAAGCACGGCAAGGCCTACAACGCCCTCGGGGAGAAGGAGAAGAGGTTCCAGGTCTTCAAGGACAACCTCCGCTTCATCGATCTCCACAACTCCGCTAACCGAACCTACCGCCTCGGACTCAACCGCTTCGCGGATCTCACCAACCAAGAGTACCGTGCCCGCTATTTGGGAGTTAAGATCGACCCCAACCGGAGGATGCTCAAGGGCAGGACCCCGAGCAACCGTTACGCGCCACGTGTCGGGGACAAGCTACCTGATAGCGTTGATTGGAGGAAGGAAGGTGCTGTTGTACCAATTAAAGATCAAGGAAGCTGTGggagctgttgggcattctctgcaatttctgcggtggaaggaataaataagattgtaacaggcgatctgatttcattatcagaacaagagttggtggattgtgatatatcatataatcaaggatgtaatggaggacttatggactacgcctttgacttcatcatcaataatggagggatcgactctgaagaggattacccttacgaaggtgttgatggTAGATGTGACAATTACAGGAAAAATGCTAAAgttgttactattgatagctacgaagatgttcctgcctacgatgagatagccttgaaaaaggctgttgcaaatcagcccgtggcagtagctattgaaggagggggcagggaatttcaattATATGTATCTggtgtatttaccggtagatgtggaacagcattagatcatggtgtcgtggctgttggatatggtacagataagggtaaagattattggatcgtaaggaattcatggggtcctagctggggagaggatgggtatgtcagattagagagaaacctggtttcagctagatcaggcaagtgtggaattgcaattgagccatcttatccCATTAAGAAAGGTCCAAATCCCCCTAATCCCGGACCATCACCCCCTTCACCCGTGAGCCCACCAAATGTTTGTGACAATTACTATAGCTGTGCCGATAGTGCCACTTGTTGCTGTATTTTCCCATATGGAAATTACTGCTTCGAGTGGGGTTGCTGCCCTCTTGAAGGTGCTACCTGCTGTGAAGACAACTACAGTTGCTGCCCTCATGATTATCCAGTCTGTGACATTTATCGTGGTGTTTGTCTGAAGAGTAAGAACAATCCAATTGGAGTGAAGGCATTGAGGCGTACTCCAGCTAAACCCCATTGGGCCTTTGGAGATACTAACAAGGTCAGCAGTGCTTAA 1410 0.3163 MASITSTNMAMLLLLALFALSSASDMSIISYDKGHADKGRWRSDEEVMSLYEQWVMKHGKAYNALGEKEKRFQVFKDNLRFIDLHNSANRTYRLGLNRFADLTNQEYRARYLGVKIDPNRRMLKGRTPSNRYAPRVGDKLPDSVDWRKEGAVVPIKDQGSCGSCWAFSAISAVEGINKIVTGDLISLSEQELVDCDISYNQGCNGGLMDYAFDFIINNGGIDSEEDYPYEGVDGRCDNYRKNAKVVTIDSYEDVPAYDEIALKKAVANQPVAVAIEGGGREFQLYVSGVFTGRCGTALDHGVVAVGYGTDKGKDYWIVRNSWGPSWGEDGYVRLERNLVSARSGKCGIAIEPSYPIKKGPNPPNPGPSPPSPVSPPNVCDNYYSCADSATCCCIFPYGNYCFEWGCCPLEGATCCEDNYSCCPHDYPVCDIYRGVCLKSKNNPIGVKALRRTPAKPHWAFGDTNKVSSA 469
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cca05g00142 469 CDD Peptidase_C1A 141 355 IPR039417 -
Cca05g00142 469 SMART pept_c1 140 356 IPR000668 GO:0006508|GO:0008234
Cca05g00142 469 ProSitePatterns Eukaryotic thiol (cysteine) proteases asparagine active site. 315 334 IPR025661 -
Cca05g00142 469 PANTHER CYSTEINE PROTEASE 33 385 - -
Cca05g00142 469 ProSitePatterns Eukaryotic thiol (cysteine) proteases cysteine active site. 158 169 IPR000169 -
Cca05g00142 469 Gene3D Granulin 377 439 IPR037277 -
Cca05g00142 469 PRINTS Papain cysteine protease (C1) family signature 158 173 IPR000668 GO:0006508|GO:0008234
Cca05g00142 469 PRINTS Papain cysteine protease (C1) family signature 300 310 IPR000668 GO:0006508|GO:0008234
Cca05g00142 469 PRINTS Papain cysteine protease (C1) family signature 315 321 IPR000668 GO:0006508|GO:0008234
Cca05g00142 469 SUPERFAMILY Cysteine proteinases 43 356 IPR038765 -
Cca05g00142 469 Gene3D Cysteine proteinases 31 358 - -
Cca05g00142 469 Pfam Papain family cysteine protease 140 356 IPR000668 GO:0006508|GO:0008234
Cca05g00142 469 Pfam Cathepsin propeptide inhibitor domain (I29) 51 107 IPR013201 -
Cca05g00142 469 SMART Inhibitor_I29_2 51 107 IPR013201 -
Cca05g00142 469 SMART GRAN_2 379 436 IPR000118 -
Cca05g00142 469 Pfam Granulin 390 437 IPR000118 -
Cca05g00142 469 SUPERFAMILY Granulin repeat 376 410 - -
Cca05g00142 469 PANTHER CYSTEINE PROTEASE FAMILY C1-RELATED 33 385 - -
Cca05g00142 469 ProSitePatterns Eukaryotic thiol (cysteine) proteases histidine active site. 298 308 IPR025660 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Cca05g00142 Cca-Chr5 3283332 3287345 Dispersed/Proximal
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Cca05g00142 05 3283332 3287345 Cca05g00142 05 3283332 3287345 ECH
Cca05g00142 05 3283332 3287345 Cca07g00476 07 6450933 6455431 PCT