Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cca05g00134 ATGGGCCAATCTGCGTCCTCCGCTGCTGTCGCTAGCCGTCGCGAGAGGGACCAAGGCCAACGCTCCGTCAACGTCTCCAAGACCAGATCCGCCGCCTCGGTTTCGCCGATGGTAACTTATTCAGCCGGCGAAGAAGACAGCGAAAACCTTAGCGTCGAAGCAGTTACCGATGGAATTGCTGACTACATCTCCGATCTCCCGAACGAGTGCGTGGCTTCGGTGTTTCAGTTTCTCGGCTCCGCCGATCGTAACCGCTGCTCGCTCGTTTGCCGGCGGTGGCTGCAGATCGAAGGACAGAGCCGTCACCGGCTCTCGCTGAACGCTGAATCGGATCTCCTTCCGGCGATTCCGTCGCTCTTCTCTCGCTTCGATTCGGTGACGAAGCTCGCGCTGAAGTGCGACCGCAGATCCGTGAGCATAAAAGACGACGCGCTAGTGTTGATCTCGCAGCGGTGCCCTAACCTCACGCGCCTTAAGCTCCGCGCGTGCCGCGAGCTCACCGACGCCGGAATGGAAGCGTTTGCCAAAAACTGCAAGGGATTGAAGAAGCTCTCGTGCGGATCGTGCACGTTCGGATCCAAAGGCATGAACGCGGTGCTCGACAACTGCGCCGCGCTGGAGGAGCTCTCCGTGAAGCGCCTCCGCGGAATCACCGACGCGGCAGCGGCGGAGCCCATCGGTCCCGGCGCGGCTGTGTCGTCGCTCAGAACCGTGTGTCTGAAGGAGCTCTACAACGGCCAGTGTTTCGGAACGCTGATTCTCGGCGCGAAGAATCTGAAAACCTTGAAGCTTTTCCGGTGCTCCGGCGATTGGGACCGCCTCTTCCAACTGATGGCGGCTCGAGCCGCGAACATTGTTGAGGTCCACCTCGAGAGGCTTCAGATTAGCGACGTTGGATTGCAAGCAATCGCGAATTACTCGAGTCTGGAGATTCTGCATCTTGTAAAGACTCCCGAATGTTCTGATATCGGACTTGTTGCTATTGCAGATAGGTGCAAGCTTCTGAGGAAGCTTCACATTGATGGATGGAAGGCGAATCGAATTGGCGATGAAGGGTTAATAGCTGTTGCAAAAGGTTGCCCTAATTTACTTGAACTAGTGCTTATTGGGGTTAACCCTACCAAAGCGAGTTTGGAAATGTTGGCGTCTAATTGCCAGAATCTTGAGCGTTTGGCTTTGTGTGGAAGTGATTCAGTTGGTGATCCTGAGATATCTTGCATTGCTGCTAAGTGTGTGGCGTTGAAAAAACTGTGTATTAAGAGTTGTCCTGTTTCTGATCACGGCATGGAGGCATTGGCGAGTGGTTGTCCCAATTTGGTAAAAGTGAAGGTTAAGAAGTGTAAGTTGGTTACCCCAGAGGGTGGGGATTGGTTGAGGAGGACTAGGGGTTCAATTGCTGTTAATTTAGATACCGGTGAGGCAGAGCTTCAGGAAGCGAGTGCTAGTGATGGAGGGGTACAGGATAATGGTCTGGAGTTTCCTCCAATGCCCGCCCAAATTGCGGCAGCGGCAGCCACCGCGTCTGGCAGCACAGCTCGGTCTAGTTCGTTCAAGTCAAGATTAGGGCTTTTGTCTGGGAGGAGTTTAGTGGCTAGCACTTTAAGAAGATGGTCGGGTGGTAGCACTAGTGCGCGCCATGGTTAG 1644 0.5456 MGQSASSAAVASRRERDQGQRSVNVSKTRSAASVSPMVTYSAGEEDSENLSVEAVTDGIADYISDLPNECVASVFQFLGSADRNRCSLVCRRWLQIEGQSRHRLSLNAESDLLPAIPSLFSRFDSVTKLALKCDRRSVSIKDDALVLISQRCPNLTRLKLRACRELTDAGMEAFAKNCKGLKKLSCGSCTFGSKGMNAVLDNCAALEELSVKRLRGITDAAAAEPIGPGAAVSSLRTVCLKELYNGQCFGTLILGAKNLKTLKLFRCSGDWDRLFQLMAARAANIVEVHLERLQISDVGLQAIANYSSLEILHLVKTPECSDIGLVAIADRCKLLRKLHIDGWKANRIGDEGLIAVAKGCPNLLELVLIGVNPTKASLEMLASNCQNLERLALCGSDSVGDPEISCIAAKCVALKKLCIKSCPVSDHGMEALASGCPNLVKVKVKKCKLVTPEGGDWLRRTRGSIAVNLDTGEAELQEASASDGGVQDNGLEFPPMPAQIAAAAATASGSTARSSSFKSRLGLLSGRSLVASTLRRWSGGSTSARHG 547
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cca05g00134 547 Gene3D Ribonuclease Inhibitor 97 487 IPR032675 -
Cca05g00134 547 SUPERFAMILY RNI-like 112 469 - -
Cca05g00134 547 MobiDBLite consensus disorder prediction 1 38 - -
Cca05g00134 547 Pfam F-box domain 63 96 IPR001810 GO:0005515
Cca05g00134 547 SMART fbox_2 66 106 IPR001810 GO:0005515
Cca05g00134 547 SUPERFAMILY F-box domain 61 96 IPR036047 GO:0005515
Cca05g00134 547 PANTHER UNCHARACTERIZED 46 474 - -
Cca05g00134 547 Pfam Leucine Rich repeat 152 175 IPR001611 GO:0005515
Cca05g00134 547 Gene3D - 62 96 - -
Cca05g00134 547 SMART LRR_CC_2 178 202 IPR006553 -
Cca05g00134 547 SMART LRR_CC_2 152 177 IPR006553 -
Cca05g00134 547 SMART LRR_CC_2 411 435 IPR006553 -
Cca05g00134 547 SMART LRR_CC_2 385 410 IPR006553 -
Cca05g00134 547 SMART LRR_CC_2 282 306 IPR006553 -
Cca05g00134 547 SMART LRR_CC_2 203 241 IPR006553 -
Cca05g00134 547 SMART LRR_CC_2 307 331 IPR006553 -
Cca05g00134 547 SMART LRR_CC_2 332 359 IPR006553 -
Cca05g00134 547 MobiDBLite consensus disorder prediction 23 38 - -
Cca05g00134 547 PANTHER F-BOX PROTEIN SKIP2 46 474 - -
Cca05g00134 547 ProSiteProfiles F-box domain profile. 60 96 IPR001810 GO:0005515
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Cca05g00134 Cca-Chr5 3186593 3188236 Dispersed/Wgd
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Cca05g00134 05 3186593 3188236 Cca05g00134 05 3186593 3188236 ECH