Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cca05g00128 ATGGCGTCGGGAAGCAGAGAAATGATGGATCGGGTCAAGGGTCCGTGGAGCCCGGAAGAGGACGAGGCGCTCAAGAGGCTGGTCCAGGCCCACGGGCCGAGGAACTGGTCGCTGATAAGCAAGTCCATTCCGGGGCGATCCGGGAAATCGTGCCGGCTGCGGTGGTGCAACCAGCTCTCTCCGCAGGTGGAGCACCGTCCGTTCTCGGCGGAGGAGGACGAGGCCATCGTCAGGGCCCACTCCACGTTCGGAAACAAGTGGGCTACCATAGCCCGCTTGCTCAACGGCCGCACCGATAACGCCGTCAAAAACCACTGGAATTCCACCCTCAAGAGAAAATGCTCCGCCGTCAGTCCCGACGACCCTCGGCCTCTCAAAAGATCCGCCAGCGTCGGCGCGGCCCACTTAAACCCTGGAAGCCCATCAGGGTCTGATTTGAGCGATCCGGGCCTGCCCGCTATGTCCAACCCCACGGCCCATTGCAGGCCCAACCTCATGGAAACTGCCTCTTCTGCCTCCGATCCAGCCACGTCGCTCAGTTTGTCTCTTCCCGGGTTCGGGTCCAGGCCTATAGCGTTAGCACCATCGCCGTCACTGGTGCTGCCGGTGCCAGTGCCAGTGCCGGTGCCTCCTGCGGCGGCCACGGTGGAGGAGCGGGGAAAGCAATTGTTCAACTCTGAGTTTTGGAGCGTGATGCAAGAGATAGTAAGGAAGGAAGTGAGAAGTTACTTCTCGGGAATTGAACAGAATGGACTCCGAATGCACACCGAAGCCATTGGAAACGCGGTGGTGAAGCGCATGGGAATTAGCAACATCGAGTGA 822 0.6022 MASGSREMMDRVKGPWSPEEDEALKRLVQAHGPRNWSLISKSIPGRSGKSCRLRWCNQLSPQVEHRPFSAEEDEAIVRAHSTFGNKWATIARLLNGRTDNAVKNHWNSTLKRKCSAVSPDDPRPLKRSASVGAAHLNPGSPSGSDLSDPGLPAMSNPTAHCRPNLMETASSASDPATSLSLSLPGFGSRPIALAPSPSLVLPVPVPVPVPPAAATVEERGKQLFNSEFWSVMQEIVRKEVRSYFSGIEQNGLRMHTEAIGNAVVKRMGISNIE 273
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cca05g00128 273 ProSiteProfiles Myb-like domain profile. 60 110 IPR001005 -
Cca05g00128 273 ProSiteProfiles Myb-type HTH DNA-binding domain profile. 65 114 IPR017930 -
Cca05g00128 273 CDD SANT 15 57 IPR001005 -
Cca05g00128 273 ProSiteProfiles Myb-type HTH DNA-binding domain profile. 8 63 IPR017930 -
Cca05g00128 273 SUPERFAMILY Homeodomain-like 10 106 IPR009057 -
Cca05g00128 273 PANTHER MYB PROTEIN-RELATED 9 243 - -
Cca05g00128 273 PANTHER TRANSCRIPTION FACTOR MYB44-LIKE 9 243 - -
Cca05g00128 273 Gene3D - 66 130 - -
Cca05g00128 273 ProSiteProfiles Myb-like domain profile. 8 59 IPR001005 -
Cca05g00128 273 CDD SANT 67 110 IPR001005 -
Cca05g00128 273 MobiDBLite consensus disorder prediction 113 163 - -
Cca05g00128 273 Pfam Myb-like DNA-binding domain 13 59 IPR001005 -
Cca05g00128 273 Pfam Myb-like DNA-binding domain 67 109 IPR001005 -
Cca05g00128 273 Gene3D - 12 64 - -
Cca05g00128 273 SMART sant 64 112 IPR001005 -
Cca05g00128 273 SMART sant 12 61 IPR001005 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Cca05g00128 Cca-Chr5 2940948 2942379 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Cca05g00128 1 249 MYB Transcription Factor Family AT4G37260 50.890 1.41e-84 254
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF MYB Cca05g00128 Myb_DNA-binding 2.9e-17 CL0123
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Cca05g00128 05 2940948 2942379 Cca05g00128 05 2940948 2942379 ECH
Cca05g00128 05 2940948 2942379 Cca07g00484 07 6606219 6607176 PCT