Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cca05g00119 ATGGCCAACGCAGAGAACAACACGCACTCTTCTTCTTCTTCTGAAATATGCGATCATCTTCGTCCCTACAAGAAGAGACGCTACGTTTTGCATGGCTTCACCAACGTTGCCACGTCGAAAAAATCTGTATTACAATTTCAAAAACCCGTACCCATGTTAAAGAACCCTCGACCATTGCGTGATCGTTGCGTTTCTGATATTTACGAATACCTACGTTGGATCGAGATAGATCCTACTAGGGCACCCTCACCTAATTATATTGAGAAAGTTCAGTGCGATATTAGTGCTTACACGAGGGCTATTGTTGTGGGTTGGTTGGTGGAGAAGACCGACAAATACGAACTTGTTTCGGATGTGCTCTATTCTAGTGTTGCTTATTTGGATAGGTTTCTATCCTTCAATAATACGCCCATAGACAAGATGCTATTGCTTGGACTTTCTTCCTTGCTTGTTGCTTCAAAATATGAAGATAGGAGGGCACTTACTATTGAGGACCTTCGTTACATTGCGGGTTACTCATGCTCTAATCAGGAGGTTGTGAACATGGAAGCTGATATATTGAAGGTTTTGAAGTTTGAATTGGGTTCTCCTACTGTGAACACATTCTTAACGAGATTCGTTACGGTTGGTCAAGAGGATATTGATAATTCTAGTCTTCATTTTGAGCCCCTTAGTCGTTACATTGCTGAACTCAGTTTGTTCGATTATCATTGTCTAAAGTTCTTGCCATCTTTGGTAGCTGCGTCTGTTGTATTTCTCACCAGATTTATATTAAGTCCAAACACAAATCCTTGGAATTCAAAGCTTCACCAAATCACCAGATATACACCTGCTCACATGAAGGAATGTGTTCTAAGCATCCATGACTTCTACCTTAGAAGGAGATGGAGTTCTGTAGAAATTGTGAGAGAGAAATATAGACAAAGCAAGATAGATCCTACTAGGGCACCCTCACCTAATTATATTGAGAAAGTTCAGTGCGATATTAGTGCTTACACGAGGGCTATTGTTGTGGGTTGGTTGGTGGAGAAGACCGACAAATACGAACTTGTTTCGGATGTGCTCTATTCTAGTGTTGCTTATTTGGATAGGTTTCTATCCTTCAATAATACGCCCATAGACAAGATGCTATTGCTTGGACTTTCTTCCTTGCTTGTTGCTTCAAAATATGAAGATAGGAGGGCACTTACTATTGAGGACCTTCGTTACATTGCGGGTTACTCATGCTCTAATCAGGAGGTTGTGAACATGGAAGCTGATATATTGAAGGTTTTGAAGTTTGAATTGGGTTCTCCTACTGTGAACACATTCTTAACGAGATTCGTTACGGTTGGTCAAGAGGATATTGATGTAAGTTAA 1359 0.4054 MANAENNTHSSSSSEICDHLRPYKKRRYVLHGFTNVATSKKSVLQFQKPVPMLKNPRPLRDRCVSDIYEYLRWIEIDPTRAPSPNYIEKVQCDISAYTRAIVVGWLVEKTDKYELVSDVLYSSVAYLDRFLSFNNTPIDKMLLLGLSSLLVASKYEDRRALTIEDLRYIAGYSCSNQEVVNMEADILKVLKFELGSPTVNTFLTRFVTVGQEDIDNSSLHFEPLSRYIAELSLFDYHCLKFLPSLVAASVVFLTRFILSPNTNPWNSKLHQITRYTPAHMKECVLSIHDFYLRRRWSSVEIVREKYRQSKIDPTRAPSPNYIEKVQCDISAYTRAIVVGWLVEKTDKYELVSDVLYSSVAYLDRFLSFNNTPIDKMLLLGLSSLLVASKYEDRRALTIEDLRYIAGYSCSNQEVVNMEADILKVLKFELGSPTVNTFLTRFVTVGQEDIDVS 452
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cca05g00119 452 Pfam Cyclin, N-terminal domain 314 429 IPR006671 -
Cca05g00119 452 Pfam Cyclin, N-terminal domain 66 194 IPR006671 -
Cca05g00119 452 SUPERFAMILY Cyclin-like 312 429 IPR036915 -
Cca05g00119 452 PANTHER CARBOXY-TERMINAL DOMAIN CYCLIN 59 311 - -
Cca05g00119 452 PANTHER CARBOXY-TERMINAL DOMAIN CYCLIN 312 449 - -
Cca05g00119 452 Pfam Cyclin, C-terminal domain 197 312 IPR004367 -
Cca05g00119 452 Gene3D - 319 429 - -
Cca05g00119 452 Gene3D - 83 189 - -
Cca05g00119 452 SMART Cyclin_C_2 197 318 IPR004367 -
Cca05g00119 452 Gene3D - 190 318 - -
Cca05g00119 452 CDD CYCLIN 98 187 IPR013763 -
Cca05g00119 452 PANTHER CYCLINS 59 311 IPR039361 -
Cca05g00119 452 PANTHER CYCLINS 312 449 IPR039361 -
Cca05g00119 452 SUPERFAMILY Cyclin-like 197 311 IPR036915 -
Cca05g00119 452 ProSitePatterns Cyclins signature. 99 130 IPR006671 -
Cca05g00119 452 ProSitePatterns Cyclins signature. 334 365 IPR006671 -
Cca05g00119 452 SMART cyclin_7 201 289 IPR013763 -
Cca05g00119 452 SMART cyclin_7 104 188 IPR013763 -
Cca05g00119 452 SMART cyclin_7 339 423 IPR013763 -
Cca05g00119 452 CDD CYCLIN 333 422 IPR013763 -
Cca05g00119 452 CDD CYCLIN 197 288 IPR013763 -
Cca05g00119 452 SUPERFAMILY Cyclin-like 62 194 IPR036915 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Cca05g00119 Cca-Chr5 2712141 2715479 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Cca05g00119 304 451 Core Cell Cycle Gene Families AT1G47210 46.622 6.92e-39 142