Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cca05g00112 ATGCTTTATGCTGCTATGATTGCTGCAGTTTTGTCTCAAGGAAGCAATAATACATCTAGTAAATCTTTACCCCAGTGGCCTACTTCTAACCATGACAGCCAAACTGACTCTCAAAATCAAGAACCTAAAACTGCACAACAGCAAGAGCAACCTTCATCAGAGATGGAGCTAAAGCAACATGGATGTCGTGTGGAACAACTACAGCATGTTGCTTCTCAGGACGTAAATAATCCTCTTTTGTCACAGAAACAATCTCAAGATGAATGTCACCAAGCGCCGGCTGTACAAGTTTCTCTTCAAAATTCTCAAGCTATCAGAATTCAGAATTCAGGAAAAGATCCTGTCCTTAATAATGAAGTAGGAAAGAATCATAACCCCAACAGTGAATCTCAGTATGCCAAATTGCAGCAGATGAGTAATCAACAGGCTACAGTCCCTGAGCAGCCAAGTACCCCAGGGAATCATAGTAAACAAGTACCATTTGCTCTGTTGCTACCCATCTTGATTCCTCAACTTCCCAAAGACAGAGCCATGCAACTTCAAACCTTATTTGCCAAGTTGAAGAAAGATAAAATACCGAAAGACAGTTTTGTGCGGCTTATGAAAGGCATTGTAGGGGACAAGATGCTTAGATTAGCAATAGCAACGGTCCAAATGCAACCACAGACAAGGCCCAATCAAGCATCTGTAGGGCAGCAGCACCCTGTGAGGATGCCAAATGGTAGTTCAGGTGCAAGGCAATTGAATGATCCCCATGCTTTAGCACAGATGCATCAGAGAAGTATGAATGCTTCTGTTGACCAATCTCGCATGACTTCTTCAGCTGGCCAAACTATGGAGAGCAATGCTAGAAAATCTCAGGAATTGGATGTTAAAATAGAATCTCAAGGATTGCAACCAAGCCAATTGCCATCTTCCACTTCAACCACAGTTGGTCAAGAAGCAGAAAGATCATCAGTTCACATACAAGGGCTTAATAAGCAGCAGCAACAACATCTACATTTCCCATCAGCATATGGAAATAGTGGTGGTAACTATAGCCCTTTTTCCATGACAACCAGTAGTTCCACTTCATCTATCAAACCACAACCGCATGATTCACACATTAGTCAAATTTCACATCACAGTATTGGTTCAAATCACTTAGGTGGGTCAACACATGGTATGAATGTAATTGGTATGCCAAAACTTGAACAGCATAATTCTTTCCATGATCCCAAGAGGCTGCCAGGTGGATCTGTGTCTTCTGCTGTAAACCATACAGCATCTCAACAAACTTCAAATGCTTGGCAACCATCAATAAACAAAGAACAAAATCTGGGCTTAATGTCATCTGTTTCTTATGTCAAAAAGGAACCTAGTGACTTGTCTACAGAGCAGCAAAATAGGCATAATTTGACTAAATTGCATGGGTATTCTTCTGTTAATTCTGCTCAGATTGAACAGGGTGGTGCTAGTCAAGGAATTGTAAAGGATGAGTTTTCAAGAGGTCTTCCAGCATCCACAACTATGCCACCTACAACATCTTCTGGGTTGTTGCCACACAGTTCTGCCTCCCCTTCTGCAATGACCCAACTAGACCCTAGTGTCTCGATTCCATCAAATGCTTCTGGAATTGTTGCAAGGACACCTCCTAAAAAGCCTGCTGTTGCCCAAAAGAAACCACTTGAAGCACTTGGTTCCTCACCTCCTCCTCCAAGTAAAAAACAAAAAGCTTCTGGAGGATCTGTAGAACAAAGCATTGAACAACTGAATGACGTCACTGCTGTTAGTGGAGTTGACCTCAGGGAAGAGGAAGAGCAGTTATTTTCAGGGCCCAAAGAGGATAGTCGAGTTTCAGAAGCTTCTCGAAAGGCTGTGCAAGAAGAAGAGGAAAGGCTGATTTTGCAAAAAGCTCCATTGCAAAAAAAATTAATTGACATCATGGCCAAGTGTGGCTTGAAGGGTATGAGCAATGATGTGGAGAAATGCTTGTCACTGTGCGTGGAGGAAAGGATGCGTGGACTGATAAGTAATCTGATTAGAATATCAAAACAGAGAGTTGATTTTGAGAAAACAAGACATCGGACTGTTGTCACTTCAGATGTTCGGCAGCAAATCATGATGATAAATAGGAAAGTAAGGGAAGAGTGGGAGAAAAAACAGGCAGAAGCAGATAAGCTTCGGAAACTAAATGATGCTGAGAGCAATACTGGAATTGATGGTGACAAGGAGAAGGATGATGGTCGTTCTAAATCAACTAAGGTGAACAAGGAAGAGGATGACAAGATGAGGACAAATGCTGCAAATGTTGCTGCTCGTGCTGCTTATGGGGGAGATGACATGCTGTCAAAGTGGCAACTTATGGCTGAGCAAGCCAAGCAGAAACGTGAAGGGGGGACGGACATGTCATCTAGTTCTCAACCAGCTAAAGATGTGAACCGCAAATCTTCATCAACATCTGGAAGAAGTATGAAGGATAGCCAAGAAGGGGAGAAAAAAAGTCTTTCAACTTCAGTGGCTGCTAGAAAACTTGGGAGGAGTCATGCCATTGCATCTCAAACTAGGGTAGCTCGAAACATCTCTGTCAAGGATGTGATTGCAGTCCTGGAGAGGGAACCCCAGATGTCTAAATCTCCACTCATACATCGCTTGTACGAGAAAATTCATTCTGATGCCCCAGCTGAACAAGATCAATCGAACTATATGGGGAATCAAAATGCTACTTCAACATCTCAAATTTGA 2724 0.4247 MLYAAMIAAVLSQGSNNTSSKSLPQWPTSNHDSQTDSQNQEPKTAQQQEQPSSEMELKQHGCRVEQLQHVASQDVNNPLLSQKQSQDECHQAPAVQVSLQNSQAIRIQNSGKDPVLNNEVGKNHNPNSESQYAKLQQMSNQQATVPEQPSTPGNHSKQVPFALLLPILIPQLPKDRAMQLQTLFAKLKKDKIPKDSFVRLMKGIVGDKMLRLAIATVQMQPQTRPNQASVGQQHPVRMPNGSSGARQLNDPHALAQMHQRSMNASVDQSRMTSSAGQTMESNARKSQELDVKIESQGLQPSQLPSSTSTTVGQEAERSSVHIQGLNKQQQQHLHFPSAYGNSGGNYSPFSMTTSSSTSSIKPQPHDSHISQISHHSIGSNHLGGSTHGMNVIGMPKLEQHNSFHDPKRLPGGSVSSAVNHTASQQTSNAWQPSINKEQNLGLMSSVSYVKKEPSDLSTEQQNRHNLTKLHGYSSVNSAQIEQGGASQGIVKDEFSRGLPASTTMPPTTSSGLLPHSSASPSAMTQLDPSVSIPSNASGIVARTPPKKPAVAQKKPLEALGSSPPPPSKKQKASGGSVEQSIEQLNDVTAVSGVDLREEEEQLFSGPKEDSRVSEASRKAVQEEEERLILQKAPLQKKLIDIMAKCGLKGMSNDVEKCLSLCVEERMRGLISNLIRISKQRVDFEKTRHRTVVTSDVRQQIMMINRKVREEWEKKQAEADKLRKLNDAESNTGIDGDKEKDDGRSKSTKVNKEEDDKMRTNAANVAARAAYGGDDMLSKWQLMAEQAKQKREGGTDMSSSSQPAKDVNRKSSSTSGRSMKDSQEGEKKSLSTSVAARKLGRSHAIASQTRVARNISVKDVIAVLEREPQMSKSPLIHRLYEKIHSDAPAEQDQSNYMGNQNATSTSQI 907
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cca05g00112 907 MobiDBLite consensus disorder prediction 221 284 - -
Cca05g00112 907 Pfam RCD1-SRO-TAF4 (RST) plant domain 155 218 IPR022003 -
Cca05g00112 907 MobiDBLite consensus disorder prediction 792 818 - -
Cca05g00112 907 PANTHER TRANSCRIPTION INITIATION FACTOR TFIID SUBUNIT 4 9 319 IPR045144 GO:0005669|GO:0006352
Cca05g00112 907 MobiDBLite consensus disorder prediction 221 318 - -
Cca05g00112 907 MobiDBLite consensus disorder prediction 784 845 - -
Cca05g00112 907 MobiDBLite consensus disorder prediction 13 55 - -
Cca05g00112 907 MobiDBLite consensus disorder prediction 888 907 - -
Cca05g00112 907 CDD TAF4 579 877 IPR007900 GO:0005669|GO:0006352
Cca05g00112 907 MobiDBLite consensus disorder prediction 885 907 - -
Cca05g00112 907 Coils Coil 704 724 - -
Cca05g00112 907 MobiDBLite consensus disorder prediction 109 156 - -
Cca05g00112 907 PANTHER IP01149P-RELATED 309 883 - -
Cca05g00112 907 MobiDBLite consensus disorder prediction 350 371 - -
Cca05g00112 907 ProSiteProfiles RST domain profile. 152 223 IPR022003 -
Cca05g00112 907 Pfam Transcription initiation factor TFIID component TAF4 family 584 877 IPR007900 GO:0005669|GO:0006352
Cca05g00112 907 MobiDBLite consensus disorder prediction 500 538 - -
Cca05g00112 907 PANTHER TRANSCRIPTION INITIATION FACTOR TFIID SUBUNIT 4 309 883 IPR045144 GO:0005669|GO:0006352
Cca05g00112 907 Gene3D Histone, subunit A 629 674 IPR009072 GO:0046982
Cca05g00112 907 PANTHER IP01149P-RELATED 9 319 - -
Cca05g00112 907 MobiDBLite consensus disorder prediction 496 579 - -
Cca05g00112 907 MobiDBLite consensus disorder prediction 722 760 - -
Cca05g00112 907 MobiDBLite consensus disorder prediction 13 61 - -
Cca05g00112 907 MobiDBLite consensus disorder prediction 292 318 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Cca05g00112 Cca-Chr5 2592473 2600530 Dispersed