Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cca05g00103 ATGGCTCTGGAAGCTCTCAACTCACCCACAACAACCGCCCCATCTTTCCCCTTCGACGACCCAAGCGTGCCATGGGCAAAACGCAAGCGTTCCAAGCGTTCGCGTGACCACCCTTCCGAAGAAGAGTACCTCGCTCTCTGCCTCATCATGCTCGCTCGCGGCACCACCAACCGCCACCTCACCACCCATCATTCTTCCAACCTCTCTTACAAATGCTCCGTTTGCCACAAAGCCTTCCCCTCCTACCAAGCGCTCGGCGGTCACAAGGCTAGCCACCGCAAACTCATTGCCGCCGAAGaccaacccacctcctccaccgccaccgccaccagctccgccGGAGCTCCTAGGACCCACCAGTGCTCCATCTGCCACAAAACCTTCCCCACCGGACAGGCCCTCGGCGGACACAAACGTTGTCACTACGAAGTTTATGATGAATATTGCGTGGAACCGCCATGA 462 0.5238 MALEALNSPTTTAPSFPFDDPSVPWAKRKRSKRSRDHPSEEEYLALCLIMLARGTTNRHLTTHHSSNLSYKCSVCHKAFPSYQALGGHKASHRKLIAAEDQPTSSTATATSSAGAPRTHQCSICHKTFPTGQALGGHKRCHYEVYDEYCVEPP 153
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cca05g00103 153 PANTHER ZINC FINGER PROTEIN ZAT10 1 145 - -
Cca05g00103 153 Gene3D Classic Zinc Finger 50 92 - -
Cca05g00103 153 ProSiteProfiles Zinc finger C2H2 type domain profile. 70 92 IPR013087 -
Cca05g00103 153 SMART c2h2final6 119 141 IPR013087 -
Cca05g00103 153 SMART c2h2final6 70 92 IPR013087 -
Cca05g00103 153 ProSitePatterns Zinc finger C2H2 type domain signature. 121 141 IPR013087 -
Cca05g00103 153 PANTHER C2H2 TYPE ZINC FINGER TRANSCRIPTION FACTOR FAMILY-RELATED 1 145 IPR044653 GO:0003700
Cca05g00103 153 MobiDBLite consensus disorder prediction 1 37 - -
Cca05g00103 153 ProSitePatterns Zinc finger C2H2 type domain signature. 72 92 IPR013087 -
Cca05g00103 153 MobiDBLite consensus disorder prediction 1 17 - -
Cca05g00103 153 Pfam C2H2-type zinc finger 70 94 - -
Cca05g00103 153 Pfam C2H2-type zinc finger 119 143 - -
Cca05g00103 153 ProSiteProfiles Zinc finger C2H2 type domain profile. 119 141 IPR013087 -
Cca05g00103 153 SUPERFAMILY beta-beta-alpha zinc fingers 68 93 IPR036236 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Cca05g00103 Cca-Chr5 2462148 2463095 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Cca05g00103 25 142 C2H2 Transcription Factor Family AT3G49930 55.474 3.21e-42 138
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF C2H2 Cca05g00103 zf-C2H2_6 9.9e-12 CL0361
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Cca05g00103 05 2462148 2463095 Cca05g00103 05 2462148 2463095 ECH
Cca05g00103 05 2462148 2463095 Cca03g01811 03 37332843 37334409 PCT