Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cca05g00102 ATGGAACCTGTTGGAGCCTTCCCTGATGGAGAATGGGATTGCTTCCGCAGAATGTTTGGCAGTGAGGAGCATGATTTCACACCCCAGATTCCACTTCTGCTTCATGGTGATGATGAATTGAACATTTTGACACAACCAACATTTTGTGCTGGTGCTGAAAATATTGAGCGTATGTTTTATTCTTTAGATGCTCACAATCACAACTCAAATTCCCAGTATATTTCACAAGAAAGTAGCTATAGTAGTAATTGTAGTGGTGACACTGTCTTCATTGCCAATCCGGGTAGTGCAAACTATTATTTTAGTTACCCTGATCATGTGCTAGCAAATAATGCATGTGAATATTCCATGGATGAGAAAATTTTTGCCTCTTTTGTGCCATCACTTGCTGACATTGTAACCGAAGAGAGTGTCAAAGATATTGGGAGTGACATATTGGAGAATTCTGAATGCAATCATATGGAACCTATTGTTTTTCCCACCAAGCAGCTGCAGCTCAAAAGGAAGCTTGATCTGCCTGATGAAGATAAAATCAACAACAGATCCGAGAATCACAAGAAAAAGGCTCGTGTCTCAAAAGATGGGCAAGGATGCATGAAAAATACATGGTCCAAGAAGAATCAGAAACAAGGAAGCAATGATGATGCAGAAGAGACTAATGCAGGATCAGATGGACATAGCTCAAGTAGTAACATGTCAGAAGATGATAATAAGGAGAATAGTGGAGGAGCCACTTCAGGCTCTAAATCTCTTCTCAACTCAAATGGGAAGACAAGAGCAAGTAGGGGGTCAGCAACAGATCCACAGAGTCTCTATGCAAGGAAAAGAAGAGAGAGAATAAATGAGCGACTAAGAATCCTACAAAATCTTGTCCCAAACGGAACCAAGGTTGATATAAGTACAATGCTTGAAGAGGCAGTCAATTACGTGAAATTTTTACAGCTCCAGATCAAGCTTTTGAGCTCTGATGACCTATGGATGTATGCTCCGCTGGCTTATAATGGGCTTGACATTGGACTCAATCTCAACATGAAGAACTCCGTACCACTATGA 1053 0.4074 MEPVGAFPDGEWDCFRRMFGSEEHDFTPQIPLLLHGDDELNILTQPTFCAGAENIERMFYSLDAHNHNSNSQYISQESSYSSNCSGDTVFIANPGSANYYFSYPDHVLANNACEYSMDEKIFASFVPSLADIVTEESVKDIGSDILENSECNHMEPIVFPTKQLQLKRKLDLPDEDKINNRSENHKKKARVSKDGQGCMKNTWSKKNQKQGSNDDAEETNAGSDGHSSSSNMSEDDNKENSGGATSGSKSLLNSNGKTRASRGSATDPQSLYARKRRERINERLRILQNLVPNGTKVDISTMLEEAVNYVKFLQLQIKLLSSDDLWMYAPLAYNGLDIGLNLNMKNSVPL 350
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cca05g00102 350 PANTHER TRANSCRIPTION FACTOR BHLH83-RELATED 3 348 - -
Cca05g00102 350 SUPERFAMILY HLH, helix-loop-helix DNA-binding domain 264 328 IPR036638 GO:0046983
Cca05g00102 350 MobiDBLite consensus disorder prediction 170 276 - -
Cca05g00102 350 MobiDBLite consensus disorder prediction 197 268 - -
Cca05g00102 350 CDD bHLH_AtIND_like 265 327 - -
Cca05g00102 350 Pfam Helix-loop-helix DNA-binding domain 274 314 IPR011598 GO:0046983
Cca05g00102 350 PANTHER HELIX LOOP HELIX DNA-BINDING DOMAIN PROTEIN 3 348 - -
Cca05g00102 350 MobiDBLite consensus disorder prediction 170 194 - -
Cca05g00102 350 ProSiteProfiles Myc-type, basic helix-loop-helix (bHLH) domain profile. 264 313 IPR011598 GO:0046983
Cca05g00102 350 SMART finulus 270 319 IPR011598 GO:0046983
Cca05g00102 350 Gene3D - 266 322 IPR036638 GO:0046983
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Cca05g00102 Cca-Chr5 2414854 2417048 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Cca05g00102 239 340 Basic Helix-Loop-Helix Transcription Factor Gene Family AT4G33880 82.243 2.11e-54 180
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF bHLH Cca05g00102 HLH 1.2e-08 No_clan
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Cca05g00102 05 2414854 2417048 Cca05g00102 05 2414854 2417048 ECH