Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cca05g00101 ATGGCCTCAGTGGAGCAGCCTCCGAAGAAGCGAAAGCTGTACGAGCCTTTACCCGAATCGCCACCGTCTGTGCCTCCGCCGCCGCCAGCACCGGCGGAGGCGTCCGACGCCACCCCTCCCTCCCCGCAAGCCCTACCCTCGCCGTCAACTCCCCCGCTGTCTCAGGAGGAGATTCTCGCGAAGCGGCGGAACAAGGATGAAATTCGAAGCGTGTACGAAGGCTACAAGCGGATTAAGCTTTGCTTGCTTCAGAAAGACGCTCCCAACATGTCAGACCTTGAACAGAGTTATCTCGCTCTCATCACTTCTTCTAGAGGTTGTATTAGTGTACAGAGAATTGTGGCCGATCTTATCCCTCGATACGCATGTCACTGTCCAACAGCTTTGGAAGCTGCAGCTAAAGTTGTTATTAATATGCACAACTCGAGTTTGGCGTTAATCAGTAAAGGAGAGGATTCCAATGGTATTGCATTTGAAACTGCTAGAGCCTGTATTTGTGGCCTAGCTGATATTTGCTGCATTGCTTCATCTGTTGTGCCAACATCAGCTGTAATTAGAGGAATTTGCTCAGCAGTTTTTCAGAATATGCTCACTTTTTTTATAAACTTATTTGAAGGAAAGGATGTCTTTCAGATGCTAGACAAGAATTTCCTGAATATGCAAGATACCCCTGAGGTTTTTTCTGAGTTGAAACAAAATGTTTTAGATGAAGATGAGTCTTCATTGACTAAACTGTCCAAGTTGCGTGCATTATGTCTACTTTGGATATTCTTCTCTTGTCCAAAAGATTTGCTTGCAGCTTGTTTGGAGCTCTTAGGCTCTGGCACAAAAGAGAGAGCTAATGAAGGACAGCGTTTTCTGAGCCTTGTAACTAGCACATTTGATGATGATGAAGCAGTTCACCTTTTGGATAGAGCAATTGGTGGACCTAAATCATGTACAGATTCTACTGGGTCAGGCATCAGAGACAAGGAGGCTGGTGATGAAATTATGAATGAAGACAACCATGTCTCTGGTGGTGATTTATCTGTTGGCAAGAGCTGCTTGCTTATACGGGTTCTTCACAAGGACCCCCCACTGCGGAAATGGATGTTGTGTAGATGCAAGAAATTACTTGACTTGCACTCCAATGCATCACCAGACATTACGTCATTACTACAAGGAATTCTTGGAATGTTTGCTCAACAAGCTGATTTAGAAGACTGTCAAGCAGATAGTGATGAAGATAAAGCTGATTCTTCGATTTACATGAATAGGAACTACATGGTTCCTAGGATCTGTGTGGAACATGAAAGCGTTGGTGAATCATCTGGAAAAGGCAACAGTTTGAGAGTTCATGTTGGTTCTTCTAATGGTGGTTTTACTGACAAGGTTTCTGACAAATATGTGATGGCTCATAGCTCTGCAGTTTCTCTTGAAAATGTTCCTGTGTTAAAAGTGGGCTCGCATTATGATAATGGAGTCTCAAAGCCCATGATCATTGGGATGGGGGAGGAAGGGAATATGCCCAACGTTAGATGTTCAACACCTAGGGACTCAGCAAGCCATCAAATATACTCACCTGCAGTTAGAACACCAGTAGATTTTAGGAGTAATTCATTTGAGGGTAGAAATGATTTTCTGAATTCAGAGAAAAATCAAGTCTTTAATATGAATTTCAATTCACCTCCACTGAGATCCTCTAGTGGATCTGTTAGTAATTCTTTGGCATCTCCTAATAATCATTTTATGTCGCCAACTGCTTCAGCAATAAGTCAAATTGTCTGGTGCTGTGATGGAGATCCTGCAGCCATGGATATTGTCTCTGCTGCTAAGCTGCTATGGATAGGCTATATAAGTCCTGATGTGCCCGAAAGTCATATTAGGTTTCAGTTAGAAAGATTTGGTCCTATTGAGCAATTTATTTTCTTTCCTGTAAAAGGGTTTGCCTTGGTTGAGTACAGAAGGATTGTTGATGCGATAAAATCTCGACACTATTTACACGGATGTTTTCCTTGTCGTGTAAAGTTCATGGATATAGGACTTGGAACAAGGGGTGCAATGAATGGTGTTGCAATTGGTTCTAGTTCTCATATTTGTGTTGGAAATGTTCCCAGTCAATCAGCCAAGGAAGATATCCTCCATGAATCAAGTAAAGTGATCCACAAAGGTCCTCTTGGATATATATATCTTAGCTGTGAGTTTACATTACTTGTTGAATTTGAAACTCCTGAAGAAGCTACCACTGTCATGTTGCATCTGAGACATCTCCGAAGAGAAAGAAGCAACTATAACCAGCATTTTGGTCCAGGAACAGTTAATGTTGGAATTGGGCATGCTTATATGGATTGTGCAAGGCCTTTACCTGCTCCTCCACATATTGACCTTAAAGTCAACAACCCTGCTGGATCACCTCATGCTCGAACACTACCAGGGAGCCCTGCTGACAGCAGTCGAACAAGGATGTCTCACTTGTCCTCCTTACTTGCTTCATTGCGCGCAAAGTATAATATTAATCAGAACCTAGGTCTCAATGATAATTATATAACTGGAAATAATTGTCCTTCCATGCGTGAAGAAGATATTGTGCCATCCAGCACTCTCTGCATAACTATTCCGCATAGTAGCTCTTTCTTCCTCACAGATGATGAGTTAATGGCCGTTTGCAATCTTGCCATTGGAAATGCTGGATCCATTGTTCAGTTGACACAAGCAAGCATGCAGATGGGATGTAGTTGGTTTGTTGAATGTAGTAATATTGATGGTGCCGCTTTTGTTCTAAAGAATCTACGTGGTTGTCCAGGATTGTTCTTCCAGATAGAATTCAGCAAACCTGGACATCAGAATGCTGTACCATTGTCAATTAAACCAGAGAACAATTCTATGGAGCTTGTATCCCCCAGGATAAATGCTGAAAATCATACTAGTGGAATGCAATGTGCACCTCTGCCTCAATCAAACTGGCACTTTCCTAGTTCAAGGGAAATGCCAGAGGTTGGAGCTAGGAAACCTGATGGTTATGATAATTCGTCACAGGATCCTCACCAAGGAGGTAATGTTCCACATATGCACTCTGCAGCACATGGACCTTCCATTCCACCACCACAACAAATTCAGTCATCTCCTTTTGTTCGCCCTGTTTATGTTCCTCCAAATGGTCCATGGGATTGTCGGGGAATAAATAATCATTTACCTGTCAGCCAATTCAAGACGGGAGTAATGCCAAATAATTTTCATAGTAATGCTGTTGTAACTCCTTTTATTCCTGCTTCAGTAACTCCACTTGCTCAGATACAAGGAACTCCAATGCAGCCCTATAACCAGCAGGTGCCTCCATCAATTATACCACCACCTTTATCATCCTTGCCGCCTCAGCCAGAGATACCACCTCCAGTTCCTCCTTCTCCACCACCTTTACCCCAGGTTCAGCCACCCTTGGTtcctccactgcctagttcgcctcctcctcctcctcctccaccACTGCCTGTCCAAGAATCAGTCAATGTTGAATGTTCAGGACAGTCTGTGCAGTATCAATGGCAGGGGAATCTCTGTAAAAGTGGGGTTAATTACTGTACAATTTATGCATGCAAAGCAGATTCAAATATCTGTCGATATTCAAATGCCATACCTGAGCCTACTGAGTGGCCCACAAAATTAGACATGACAAAACGCACTGATCTTCGACATGTGAAATCAACATTTGCTGCTACTCCATCTCATAGAAGGGAAGTGTGCCGTTTAATCCCATCATCCACAAGTGACCACAGAAGGTTTCAGGATTTCATATCATACTTAAAGCAGAGGGATTGTGCTGGGGTTATTAAAATCCCAGCTTCAAAATCCATATGGGCAAGGCTTCTATTCATTCTCCCCCACTCACTTGAAACGTGCTCTTTGCTTTCTATTGCACCTGATCCGTCAGATTGCCTCATTGCTTTGGTTCTTCCCAAAGAAACAAACTTTGAGTGGGTATGA 3960 0.4247 MASVEQPPKKRKLYEPLPESPPSVPPPPPAPAEASDATPPSPQALPSPSTPPLSQEEILAKRRNKDEIRSVYEGYKRIKLCLLQKDAPNMSDLEQSYLALITSSRGCISVQRIVADLIPRYACHCPTALEAAAKVVINMHNSSLALISKGEDSNGIAFETARACICGLADICCIASSVVPTSAVIRGICSAVFQNMLTFFINLFEGKDVFQMLDKNFLNMQDTPEVFSELKQNVLDEDESSLTKLSKLRALCLLWIFFSCPKDLLAACLELLGSGTKERANEGQRFLSLVTSTFDDDEAVHLLDRAIGGPKSCTDSTGSGIRDKEAGDEIMNEDNHVSGGDLSVGKSCLLIRVLHKDPPLRKWMLCRCKKLLDLHSNASPDITSLLQGILGMFAQQADLEDCQADSDEDKADSSIYMNRNYMVPRICVEHESVGESSGKGNSLRVHVGSSNGGFTDKVSDKYVMAHSSAVSLENVPVLKVGSHYDNGVSKPMIIGMGEEGNMPNVRCSTPRDSASHQIYSPAVRTPVDFRSNSFEGRNDFLNSEKNQVFNMNFNSPPLRSSSGSVSNSLASPNNHFMSPTASAISQIVWCCDGDPAAMDIVSAAKLLWIGYISPDVPESHIRFQLERFGPIEQFIFFPVKGFALVEYRRIVDAIKSRHYLHGCFPCRVKFMDIGLGTRGAMNGVAIGSSSHICVGNVPSQSAKEDILHESSKVIHKGPLGYIYLSCEFTLLVEFETPEEATTVMLHLRHLRRERSNYNQHFGPGTVNVGIGHAYMDCARPLPAPPHIDLKVNNPAGSPHARTLPGSPADSSRTRMSHLSSLLASLRAKYNINQNLGLNDNYITGNNCPSMREEDIVPSSTLCITIPHSSSFFLTDDELMAVCNLAIGNAGSIVQLTQASMQMGCSWFVECSNIDGAAFVLKNLRGCPGLFFQIEFSKPGHQNAVPLSIKPENNSMELVSPRINAENHTSGMQCAPLPQSNWHFPSSREMPEVGARKPDGYDNSSQDPHQGGNVPHMHSAAHGPSIPPPQQIQSSPFVRPVYVPPNGPWDCRGINNHLPVSQFKTGVMPNNFHSNAVVTPFIPASVTPLAQIQGTPMQPYNQQVPPSIIPPPLSSLPPQPEIPPPVPPSPPPLPQVQPPLVPPLPSSPPPPPPPPLPVQESVNVECSGQSVQYQWQGNLCKSGVNYCTIYACKADSNICRYSNAIPEPTEWPTKLDMTKRTDLRHVKSTFAATPSHRREVCRLIPSSTSDHRRFQDFISYLKQRDCAGVIKIPASKSIWARLLFILPHSLETCSLLSIAPDPSDCLIALVLPKETNFEWV 1319
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cca05g00101 1319 MobiDBLite consensus disorder prediction 18 49 - -
Cca05g00101 1319 Pfam SPOC domain 1168 1310 IPR012921 -
Cca05g00101 1319 SUPERFAMILY RNA-binding domain, RBD 595 664 IPR035979 GO:0003676
Cca05g00101 1319 Gene3D - 596 678 IPR012677 -
Cca05g00101 1319 PANTHER ACTIVATING SIGNAL COINTEGRATOR 1 COMPLEX SUBUNIT 2 ASC-1 COMPLEX SUBUNIT P100 1 1318 - -
Cca05g00101 1319 MobiDBLite consensus disorder prediction 1102 1157 - -
Cca05g00101 1319 MobiDBLite consensus disorder prediction 1095 1157 - -
Cca05g00101 1319 MobiDBLite consensus disorder prediction 1 54 - -
Cca05g00101 1319 MobiDBLite consensus disorder prediction 967 1038 - -
Cca05g00101 1319 MobiDBLite consensus disorder prediction 967 985 - -
Cca05g00101 1319 PANTHER NUCLEIC ACID BINDING PROTEIN 1 1318 - -
Cca05g00101 1319 MobiDBLite consensus disorder prediction 791 813 - -
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Cca05g00101 05 2345408 2372355 Cca05g00101 05 2345408 2372355 ECH