Gene search


Sequence information


Select Gene Cds Cds_length GC_content Pep Pep_length
Cca05g00100 ATGTCTGGCAAAGGACCTGGTTTCTTCTCTGATATCGGCAAGAGAGGCAGAGAGATTCTCACGAAGGATTACAACTCCGATCAAAGATTCACCATCTCTTCCTCCACCAATACCGGTCTCGACCTGAACTCAACATTGGTGAAGAGTAGAGGACTTTCCTCTGGTGACGTGGCTGCGGAATTCAAGTATAACAACAAAGCTGTTAATGTCAAAGTTGATACTGAATCAAATGTGTTGACGACATTCACTGTCTCTGATGTTGTGCCATCTGCAAAAACCATTGCTTCGATACGTCTACCTGATTACAGTTCTGGCAAGTTTGAGGTTCAGTATCTTCATGATCATGTGGCTTTTACTGTTGGTGTTGGTTTAAACTGTTCCCCTGCTGTTGATTTTTCTGGGACTATGGGTACACCCAGCATTGCCTTTGGAGCAGAAACCAGCTACTCCACAAGTGTTGGCAAGTTTACGAAATACAATGCTGGTGTGTGCTTGAAAATGCCAAGTTCCAATGCTTCAGTAATATTAGGTGATAAGGGAGACTCCATGAAGGTGTCATATTTGCACCAGTTAGATAGATTGAATGGGGGAGCTGTTGTGGGAGAGATTAGCAGAAGGTTCTCTTCAAATGAGAACACATTGACAGTTGGATGTTCTTATGTGGTTGATCCGCAGACAGTTGTGAAAGCAAAACTGAACAACCATGGCAACCTTGGGGCTTTATTGCAGCATGAGCTAACACGTAAATCATTCTTGACAATCTCGGGTGCTTTTGAAACAAAGGATTTGGACAAGAATCCCAAGTTTGGTTTCTCACTCTTGCTCAAGCCTTAA 834 0.4317 MSGKGPGFFSDIGKRGREILTKDYNSDQRFTISSSTNTGLDLNSTLVKSRGLSSGDVAAEFKYNNKAVNVKVDTESNVLTTFTVSDVVPSAKTIASIRLPDYSSGKFEVQYLHDHVAFTVGVGLNCSPAVDFSGTMGTPSIAFGAETSYSTSVGKFTKYNAGVCLKMPSSNASVILGDKGDSMKVSYLHQLDRLNGGAVVGEISRRFSSNENTLTVGCSYVVDPQTVVKAKLNNHGNLGALLQHELTRKSFLTISGAFETKDLDKNPKFGFSLLLKP 277
       

Annotation information


Select Seq ID Length Analysis Description Start End IPR GO
Cca05g00100 277 ProSitePatterns Eukaryotic mitochondrial porin signature. 220 242 IPR001925 GO:0005741|GO:0008308|GO:0098656
Cca05g00100 277 Pfam Eukaryotic porin 5 270 IPR027246 GO:0005741|GO:0055085
Cca05g00100 277 Gene3D Porin 2 276 IPR023614 -
Cca05g00100 277 PANTHER PORIN/VOLTAGE-DEPENDENT ANION-SELECTIVE CHANNEL PROTEIN 1 277 - -
Cca05g00100 277 PANTHER VOLTAGE-DEPENDENT ANION-SELECTIVE CHANNEL 1 277 IPR001925 GO:0005741|GO:0008308|GO:0098656
Cca05g00100 277 CDD Porin3_VDAC 6 276 IPR001925 GO:0005741|GO:0008308|GO:0098656
       

Duplication type information


Select Gene Chromosome Start End Duplicated_type
Cca05g00100 Cca-Chr5 2332087 2334408 Proximal