Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cca05g00097 ATGGGAACCGAGAGTTACACGTACATGGGACGGAGTCTGAGCCAACTCAGCATCAACGACGATTCCTCTTCCTCCGCCTTCAGCGACTGCAACAGCGACAGATCTGGCGAATTCGCCACCGCTTCATCGCAGACGCGCCGCTTCCTCATCGCCTGCGCCACCGAAAACTCCGACGACTTGATCCGCCAGCTGGTCGCCGATCTCCACTCCTCCTCCGCCGAGGATCAGAAGCAAGCCGCCATGGAAATCCGGTTACTCGCCAAGAACAAGCCGGAGAATCGCATCAAAATCGCGAAAGCCGGCGCAATAAAACCGCTGATTTCTCTCATTTCGGCGCAGGACCTTCAGCTCCAGGAATACGGCGTCACCGCGATTCTCAACCTCTCGCTCTGCGACGAGAACAAGGAGGTGATAGCCTCCGCCGGCGCGATCAAGCCGCTGGTTCGGGCGCTGAGCACGGGGAGCGCCACGGCGAAGGAGAGCGCGGCGTGCGCGCTGCTGCGGCTGTCGCAGCTGGAGGAGAACAAGGCGGCGATCGGGCGGTCCGGCGCGATTCCGGCGCTGGTGAGCCTCCTGGAGAGCGGCGGGTTCCGCGGGAAGAAGGACGCGTCGACGGCGCTCTACTCGCTCTGCACGGTGAAGGAGAACAAGGCGAGGGCGGTGAAGGCGGGGATCATGAAGGTGCTGGTGGAGCTGATGGCGGACTTCGAGGCGAACATGGTGGACAAGTCGGCGTACGTggtgagcgtgctggtggcggtggcggaggcgagggcggcgctggtggaggagggcggcgtgccggtgCTGGTTGAGATCGTTGAGGTCGGGACGCAGAGGCAGAAGGAAATCGCGGTGGTTATTCTTTTGCAGGTGTGCGAGGACAGCGTGGCTTATCGCACCATGGTCGCTCGCGAAGGTGCCATTCCTCCTTTGGTCGCTTTGTCTCAGTCCGGCACCAATCGCGCCAAGCAAAAGGCTGAGAAACTAATCGAGCTTCTGCGACAACCTAGATCCGGCAACGGCGCTGTTTGA 1035 0.57 MGTESYTYMGRSLSQLSINDDSSSSAFSDCNSDRSGEFATASSQTRRFLIACATENSDDLIRQLVADLHSSSAEDQKQAAMEIRLLAKNKPENRIKIAKAGAIKPLISLISAQDLQLQEYGVTAILNLSLCDENKEVIASAGAIKPLVRALSTGSATAKESAACALLRLSQLEENKAAIGRSGAIPALVSLLESGGFRGKKDASTALYSLCTVKENKARAVKAGIMKVLVELMADFEANMVDKSAYVVSVLVAVAEARAALVEEGGVPVLVEIVEVGTQRQKEIAVVILLQVCEDSVAYRTMVAREGAIPPLVALSQSGTNRAKQKAEKLIELLRQPRSGNGAV 344
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cca05g00097 344 Pfam Armadillo/beta-catenin-like repeat 132 170 IPR000225 GO:0005515
Cca05g00097 344 Pfam Armadillo/beta-catenin-like repeat 91 129 IPR000225 GO:0005515
Cca05g00097 344 Pfam Armadillo/beta-catenin-like repeat 174 211 IPR000225 GO:0005515
Cca05g00097 344 PANTHER U BOX DOMAIN-CONTAINING 5 341 - -
Cca05g00097 344 ProSiteProfiles Armadillo/plakoglobin ARM repeat profile. 142 184 IPR000225 GO:0005515
Cca05g00097 344 ProSiteProfiles Armadillo/plakoglobin ARM repeat profile. 101 143 IPR000225 GO:0005515
Cca05g00097 344 SUPERFAMILY ARM repeat 58 331 IPR016024 -
Cca05g00097 344 SMART arm_5 90 130 IPR000225 GO:0005515
Cca05g00097 344 SMART arm_5 296 336 IPR000225 GO:0005515
Cca05g00097 344 SMART arm_5 172 212 IPR000225 GO:0005515
Cca05g00097 344 SMART arm_5 131 171 IPR000225 GO:0005515
Cca05g00097 344 SMART arm_5 254 294 IPR000225 GO:0005515
Cca05g00097 344 SMART arm_5 213 253 IPR000225 GO:0005515
Cca05g00097 344 PANTHER U-BOX DOMAIN-CONTAINING PROTEIN 4-LIKE ISOFORM X1 5 341 - -
Cca05g00097 344 Gene3D - 35 200 IPR011989 -
Cca05g00097 344 Gene3D - 212 340 IPR011989 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Cca05g00097 Cca-Chr5 2229212 2231917 Dispersed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Cca05g00097 11 341 U-box Gene Family AT2G23140 47.164 4.43e-86 270
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Cca05g00097 05 2229212 2231917 Cca05g00097 05 2229212 2231917 ECH