Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cca05g00093 ATGTTGTGCGCTTGTTCTGGGGAGCAATTCAAATTTGAAGAGGCGCCACAGTCACCTGACTCCTTGGCAACAAGGGATTTCTCTGCAAGTGGCCTTTCTTCAAGGACTGGGGATTGGGAATCCAAATTTGATGAAACACAAGTGGAAGATGTTGAATCTACTCTTAAAGAAGCTCTCTCATTAAACTATGAGGAAGCCCGGGCGTTGCTGGGTAGGCTTGAATATCAAAGAGGGAACTTTGATGCCTCCCTCCAAGTGTTTGAGGGTATAGACATAAGGGCTTTGATCCCAAGGATGATCAGGGCTATAGCTGAAAGAACCAAGCAAAGAAAACCACGGTCCAAGACAGATAATGTGCTTCTTAATGTGATGTCAATGCATTCAGTAAGCCTGCTTCTTGAGGCAATTTTGCTTAAATCCAAATCCTTAGAAGAACTTGGGAGATACACTGAGGCAGCAAAAGAGTGCAGAATTATTGTGGATACAGTTGAATCTGCTCTTCCTAGTGGAATGCCTGAGGGTATTGGTGAAGATTGCAAATTGCAAGAAATGTTCCACAAAGCATTGGAATTGCTTCCAAATCTATGGATCAAGGCTGGTTTTCTAGATGAAGCTGTCACTGCTTATCGGCGGGCTCTAGTCAAGCCCTGGAATTTGGAGCCGCAGAGGTTGGCCTGTGTACAAAAGGATTTGGCTACCACACTACTCTATGGTGGTGTTGAAGTAAACCTACCCTCTCAGTTGAAAGTGAAGGGTCTAACTACACCTATGAGTGGCACTGAAGAAGCAATACTTTTGCTATTAATACTCTCAGGAAAGATGGCACTTCAGGAAATAGATTGGGACCCTGAAATAATGGATCATCTTACATTTTCACTTTCAATTACTGGGATGTTTGAATCATTGGCAGATAATGTAGAGAAGATCCTTCCAGGTGTTTATGATCGAGCTGAGAGATGGTACTTTCTTGCTCTTTGTTACAGTGCGGCAGGACATCATGAAGTAGCCTTGAACCTTTTGAGGAAGGCTTGTGGTAGTTCTGAAGCAAAGCATAGACCCCATTTTCCTTCATTTTTGTTTGGTGCAAAACTTTGTTCTCTACATCCAAACCATACTCATGAAGGCATTAAATTTTCACAGGAAGTTATTGATCTATCCAAGAATAAAAATGAGCATTTTTTGGGTCATGGAAAAAAATTTCTTGGCATTTGCCATGGGGCTGCTGCTAGAATATCTGTATTGGATTCGGAAAGAATTGTATTTCAAAGAGAGTCTTTGAACTTTCTAAATGATGCTGCTGCTCTAACAGGAAATAATGACCCAGAAGTGCTATTCAGCCTGGGTTTGGAAAATGCTATTCAAAGAAATTTAAATGCAGCTTATGATAGTATAATGATGTACTCAGACATGATGGCTGGCAGCTCAAAAAGAGGTTGGCAGCTGTTAACACTGATAGTATCAGCACAACAGCGGTTTAAGGATGCAGAAACTATAGTTGATTTTGCTTTAGATGAGGTTGGTAGTGTAGATCAGTTAGAACTACTGAGACTGAAAGCTGTACTTCAAATTACTCAGCAGCAACCCAAGCAAGCAATAGAGACCTACAGAATCTTGCTAGCAGTAATTGAAGCAAAAAAGGAGCATTGGCTTGAAGATAAAACATTCAGGCATCAGGCTTTAGCAGAACAGAAGCTAGAAATGGAAGCCTGGCAGGATTTGGCTACCATTTATGCAGATCTTAGTTCCTTTCTTGATGCGAAAGCTTGTGTTGACAAAGCCCAGTTGATAGAGTTTTTTTCTCCCAGAAGTTGGCATATTACTGGGTTGTTGTTTGAAGCTCAATCATTACATAAGGAGGCCTTTGTTTCCTTCACAGTCTCGTTGTCAATAGAACCGGATTACATTCCTAGCATCATTTCAACTGCAAAATTGTTGCTTGAACTTGGCAAGCAATCACTTCCCATTGCAAGAAGCTTTTTGATGAATGCATTGAGATTAGAACCCACAAACCATGATGCATGGTTTAACCTTGGATTGGTTTCAAAAATGGAAGGTTCATTACAACAAGCAGCAGATTGCTTTCAAGCTGCATATGAGCTGAAGCTTTCAGCTCCAGTACAAAAGTTTGAGTGA 2133 0.4107 MLCACSGEQFKFEEAPQSPDSLATRDFSASGLSSRTGDWESKFDETQVEDVESTLKEALSLNYEEARALLGRLEYQRGNFDASLQVFEGIDIRALIPRMIRAIAERTKQRKPRSKTDNVLLNVMSMHSVSLLLEAILLKSKSLEELGRYTEAAKECRIIVDTVESALPSGMPEGIGEDCKLQEMFHKALELLPNLWIKAGFLDEAVTAYRRALVKPWNLEPQRLACVQKDLATTLLYGGVEVNLPSQLKVKGLTTPMSGTEEAILLLLILSGKMALQEIDWDPEIMDHLTFSLSITGMFESLADNVEKILPGVYDRAERWYFLALCYSAAGHHEVALNLLRKACGSSEAKHRPHFPSFLFGAKLCSLHPNHTHEGIKFSQEVIDLSKNKNEHFLGHGKKFLGICHGAAARISVLDSERIVFQRESLNFLNDAAALTGNNDPEVLFSLGLENAIQRNLNAAYDSIMMYSDMMAGSSKRGWQLLTLIVSAQQRFKDAETIVDFALDEVGSVDQLELLRLKAVLQITQQQPKQAIETYRILLAVIEAKKEHWLEDKTFRHQALAEQKLEMEAWQDLATIYADLSSFLDAKACVDKAQLIEFFSPRSWHITGLLFEAQSLHKEAFVSFTVSLSIEPDYIPSIISTAKLLLELGKQSLPIARSFLMNALRLEPTNHDAWFNLGLVSKMEGSLQQAADCFQAAYELKLSAPVQKFE 710
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cca05g00093 710 MobiDBLite consensus disorder prediction 15 38 - -
Cca05g00093 710 Gene3D Tetratricopeptide repeat domain 654 706 IPR011990 GO:0005515
Cca05g00093 710 Gene3D Tetratricopeptide repeat domain 27 239 IPR011990 GO:0005515
Cca05g00093 710 SUPERFAMILY TPR-like 195 594 IPR011990 GO:0005515
Cca05g00093 710 Coils Coil 56 76 - -
Cca05g00093 710 Gene3D Tetratricopeptide repeat domain 541 653 IPR011990 GO:0005515
Cca05g00093 710 SMART tpr_5 601 634 IPR019734 GO:0005515
Cca05g00093 710 SMART tpr_5 671 704 IPR019734 GO:0005515
Cca05g00093 710 SMART tpr_5 512 545 IPR019734 GO:0005515
Cca05g00093 710 SMART tpr_5 567 600 IPR019734 GO:0005515
Cca05g00093 710 SMART tpr_5 317 350 IPR019734 GO:0005515
Cca05g00093 710 MobiDBLite consensus disorder prediction 21 37 - -
Cca05g00093 710 ProSiteProfiles TPR repeat profile. 671 704 IPR019734 GO:0005515
Cca05g00093 710 PANTHER PROTEIN NPG1 1 709 IPR043376 -
Cca05g00093 710 Gene3D Tetratricopeptide repeat domain 267 540 IPR011990 GO:0005515
Cca05g00093 710 SUPERFAMILY TPR-like 558 701 IPR011990 GO:0005515
Cca05g00093 710 PANTHER PROTEIN NPGR1 1 709 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Cca05g00093 Cca-Chr5 2056218 2059258 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Cca05g00093 1 709 Calmodulin-binding Proteins AT1G27460 58.065 0.0 842
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Cca05g00093 05 2056218 2059258 Cca05g00093 05 2056218 2059258 ECH
Cca05g00093 05 2056218 2059258 Cca03g01800 03 37205286 37208633 PCT