Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cca05g00087 ATGGCCCCCGAAGACCAAGACCCCACCCTTCTGAAGCTCCACTCTGCGTGCTCCGACATCAAAACCCTCCTCCGAGCCTCGGAGCAAACAGAGGACAACCTAGGAAAAGCAGAAACGAGGTTGGAGATTATGCAAGGGTCGCTGTCGGCGGCTTCTAGAAGAATCCTCCCCCTGCAGTCCCTGGCCATGTCGAGGAAGGCGCTGGACACGAGGATCACGCGGGCGGTGTCCCCGGCGCTGGCGCTGCTGGACACGTTCAAGGCCACGGAGTCGCTGCAGGGGAGGCTGGTGGAGCTGGCGGCGAGGCTGGAGGCGGAGGAGTCGCGGCACCGGAGGGCGGAGAGGCTGGCGGAGTACGTGGCGTGCGTGGAGGAGGTGGGGGCGGGGATCAACCTCATATGCGAggaggtggaggtggtggtgcagcgcctgcaggaggtggtggagTTCATTGGGCGGACCAAGGCGGCGGATCAGGAGCGGAGCGGGAGGCTCAGGGAGGCGCTGGTGGCGCTCAAGGCGCTTTATGAGAGCGAGGTCGATGAGATGAGATTTGAGGGGATTCTGGACCAGGCCTTGGTTAGGGTGCAGGATGAGTTTGAGGAGATGTTGCTCAGGATCAAGCATAGAACCGTTGGGGATTTCTCCCATCACCAGTTGGGCTCCGACACTGAGGTTCAAGTGCTTAGACGAATTTCCACCACTCTTGCTGCTAATGATTGTCTTGACATATGCATTGACATTTACGTCAAGGCGAGATACAGAAGAGCTGCGAAGGCACTGATGAAGCTAAACCCTGATTACCTCCGAACCTACACCCCAGAAGGAATCGACGAAATGGAGTGGGAAACCTTGGAGACAGCCATAACCCTTTGGATCCAACACCTCGAAGTTGCAGTCAAGAAAGTCCTCCTCTCAGAGAAGAAACTCTGCGAAAGAGTCTTGGGCGATATCATGGAGGGACTAGTGTGGCCCGAATGCTTCATCAAAATCTCCGACAAGATCATGGCCGTTTTCTTCCGCTTCGGAGAAGGTGTGGCCCGAAGCAGCAAAGAGCCCCAGAAGTTGTTCAAACTCTTGGACATGTTCGAATCCTTGGAGAGTCTCAAATCCGAGATGCCACAAATCTTCGAAGGTGAATCCGGGTCTGACATATGCACCCGGTTCCGCGAGTTGGAGAAACTCATCATCGATGCATCGAGCAAAGTCTTCTGCGAATTCGGCCTCCAAATAGAAGGCAACATCGACGGTCTTCCACCTCCTCAAGACGGTTCCGTTCCAAAGCTCGTGCGATACGCCATCAACTATCTAAAATACCTAACCACGGTTAACTACAAGGCATCCATGGTTAAGATTCTACGAACACAACAAACGTGGAAAGGAGTCGATGGTGATGAAACGGACGAGGATTTGTTAAGGCATGCGATTTTGAACGTGATGGAGGCGCTTCAAAGAAACATAGAGTCGAAACGGTCGTGTTGTAGGGACAAGGTTTTGGTGCACGTGTTCACGATGAACACGTACTGGTACATTTACATGAGGACGAAGAACACGGAGCTTGGTGAGGTGTTGGGGGAGCAATGCATGAGGGAAGGTTACAAGGCTGTTGCGGAGGAATCTGCGTACTTGTATCAGAAGCAAGCGTGGGGGGGTTTGGTTAGGGTTTTGGACGTTgagggtttgagggaggaagggaaggggagcgtagggagggtggtgagtgagAAGATTGAGAAATTTTTGAAGGGTTTGAATGAGGTTTGTGAGAGGCATAGAGGGGTGTATAGTATACCCGATGCTGATTTGAGGGAACAGATGAGGGAAGCCACGGTGAGGCTTGTGGTGCCGTCTTATGCTGAATTTTTGGAGGCTTATTCGGGGTTGGTGCAGAGAAAAGGGTACCCTAGTGTTGAGAGGGTGAAAGTGTTGGTGGGGAAGGTTTTTGATGGGAGGATGATGAAGAGGAGAGGGTCTGCTTCTGGTGATTGGAATGTTGCACGAAACTCTGCGTCTTCGGAGAGGGATGTTAGATCAGGCAATGGTACTGGTGGTGATGTTTGA 2061 0.5041 MAPEDQDPTLLKLHSACSDIKTLLRASEQTEDNLGKAETRLEIMQGSLSAASRRILPLQSLAMSRKALDTRITRAVSPALALLDTFKATESLQGRLVELAARLEAEESRHRRAERLAEYVACVEEVGAGINLICEEVEVVVQRLQEVVEFIGRTKAADQERSGRLREALVALKALYESEVDEMRFEGILDQALVRVQDEFEEMLLRIKHRTVGDFSHHQLGSDTEVQVLRRISTTLAANDCLDICIDIYVKARYRRAAKALMKLNPDYLRTYTPEGIDEMEWETLETAITLWIQHLEVAVKKVLLSEKKLCERVLGDIMEGLVWPECFIKISDKIMAVFFRFGEGVARSSKEPQKLFKLLDMFESLESLKSEMPQIFEGESGSDICTRFRELEKLIIDASSKVFCEFGLQIEGNIDGLPPPQDGSVPKLVRYAINYLKYLTTVNYKASMVKILRTQQTWKGVDGDETDEDLLRHAILNVMEALQRNIESKRSCCRDKVLVHVFTMNTYWYIYMRTKNTELGEVLGEQCMREGYKAVAEESAYLYQKQAWGGLVRVLDVEGLREEGKGSVGRVVSEKIEKFLKGLNEVCERHRGVYSIPDADLREQMREATVRLVVPSYAEFLEAYSGLVQRKGYPSVERVKVLVGKVFDGRMMKRRGSASGDWNVARNSASSERDVRSGNGTGGDV 686
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cca05g00087 686 MobiDBLite consensus disorder prediction 656 686 - -
Cca05g00087 686 Coils Coil 20 40 - -
Cca05g00087 686 SUPERFAMILY Cullin repeat-like 164 630 IPR016159 -
Cca05g00087 686 Coils Coil 89 116 - -
Cca05g00087 686 PANTHER OS08G0519900 PROTEIN 7 650 - -
Cca05g00087 686 Gene3D Exocyst complex component Exo70 142 656 - -
Cca05g00087 686 PANTHER EXOCYST COMPLEX PROTEIN EXO70 7 650 IPR004140 GO:0000145|GO:0006887
Cca05g00087 686 MobiDBLite consensus disorder prediction 662 678 - -
Cca05g00087 686 Pfam Exo70 exocyst complex subunit 292 629 IPR046364 GO:0000145|GO:0005546|GO:0006887
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Cca05g00087 Cca-Chr5 1985283 1987925 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Cca05g00087 7 661 EXO70 exocyst subunit family AT4G31540 27.924 8.58e-76 255
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Cca05g00087 05 1985283 1987925 Cca05g00087 05 1985283 1987925 ECH