Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cca04g01956 ATGGAGCCCGAGCCCGAGGCTTGGCCTGAGTTTAATTCGAAGGACGAAGCATTCTCCTACTACCAAGCCCACGCCAAGTCCGTGGGCTTCTCCGCCATAATCAAAGCCAGCCGTCGATCCCGAATCTCCGGCAACTTCATCGACGCCAAATTCGCCTGCACCCGCTACGGCATAGCCCCCACTCCATCAAACCCTCACAAACCAAAACGGGCCCGAACCAACCCCCCTGGGCCCAAAACCGATTGCAAGGCCTGCATGCACGTCAAACGAACCCACCACGGTACTTGGATCATCTCTTCTTTCATCAAACACCACAACCACCAAACTTCCCCTCACCATAACAACAACACTGATAATAATGCAAGTCCTTCAAGGAAACCTAAGACTAAAAGAACCCTGCACCATTTGGGCGACCTTCAATTTTTGCTCAATACTCTCATGTGTATGCAGGACGAAAACCCTAATTTCTTTTACGCGGTGGATTTCGACGAGGAACAACGCCTCAGAACCGTTTTCTGGGTGGATGCTAAAGCTAGGCTTGACTACAGCCACTTCAACGATGTGATTCTTTTGGACACCACGCATGTTAAGAATGACTACAAATTGCCCTTTGTTCCCTTTGTTGGTGTGAACCACCATTCTCAGTTTTTGTTGCTGGGATTGGCCTTTGTGTGTCATGAGTCTGAATCAACGTTTGTGTGGCTGATTAGGACCTGGTTGAGGGCAATGGGAGGATGTGCTCCCAAGGTGATGCTCACGGACCGCGACCAAGCGCTGAAGAAAGCGGTTTCTCAGGTGATTCCCGATGCTTGTCATTGTTTTTGCTTGTGGCATGTGTTGAGTAAGGTTCCTGAGAAGCTCGGTCGTGTGGTGATTCGGCATGGGGAGTTTATGAGTAGGTTTAACAAGTGTGTTTTGAGGTCTAGGACAAAGGAGCAGTTTGAGAAGAGGTGGGGGAAAATGGTTGAGAGGTTTGAGTTAGGTGGTGAGAGTTGGTTGTGGGACATTTACGAGGATCGGGAACAGTGGATGCCGGTGTTTATGAAAGGGAGGAGTTTGGCTGGGATGTCTACTGTGCAGAGATCAGAAGCTATGAACTGTCTGTTTGACAAATATGTGCAGAGGAGAACTACTCTGAAAGAGTTTTTGGAGCAATACAGAGTGGTATTGCGGGTTAAGTGTGAAGAGGAGGCAAAAGCGGATTTTGAAACACTGCATAGACAGCCGGTGTTGAAGTCCCCTTCACCATTTGGGAAACAAATGGTGGGGTTTTACACGCATGCTGTGTTTAAGAAATTCCAGAGCCAGGTTTTGGGAGCTGTTGCTTGTCATCCAAGGAAAGAAAGCGAAGAGGGGCCGGTGAAAATGTTTAGTGTTCAGGATTTTGAAGAAAATCAAGATTTTGTTGTTATGTGGAATGAATTGACCTTGGAAGCATCATGTTCCTGTTTTTCCTTTGAATTCAATGGCTTTCTTTGTAGGCATGTAATGATTGTGCTACAGATTTCTGGTGTACATGGCATCCCACCTCGGTATATATTGAAACGCTGGACAAAAGATGCCAAGAGAAGACAAATAGCAAGAGATGTGTCGGATGTGGTTGTCTCCGACTCTAAGGATAAGCGCTATAATAATTTATGTCAACGAGCCTTTGCGTTGGGCCATGAAGGGTCTTTTTCGCAGGAGAGCTACATTGCTGCTGTAAATGCATTGGAAGAAGCTTTGAGAAAGTGTGAGAGCCTGAATGATTCAATTCAGAGTGTCGGAGAACCGAACCTTCCATGTTTTGGTTCTCAAGAGGTGAATCTAAGTAACAATGCAGGTCACACTAACAAAAAGGATAGTACTCTTAGGGAAAGTCAGGTATGCCCAGAACCAGAGATTATTGCTATGGGAGTTGATTCTAGCTGGCAGCAAGTGGGAAACCCAACTACACGATCAGCTGGCTTTGATTGTTCGTTTGAATCACAGCAGAGCATTCGGGAGCTGGGTCAGCTGAACTCAAGAGCTCAGAACCTGAATGGCTATTTTGCTACTCAACGAATTGAGTCAGGAATGTACCAATTGAATTCAATAGCTACTATTTGCCGTGATAATTACAGCAACCAGCATGGCATCCAAGGCCTGGGACAGTTGAACTCAATTACACCCATCCATGATCCTCATTACATGGCCCCACAAAGGATGAATGGGATGGGTCAGCCTGATGGAGGGTCCTCACAACTCCATGAGTTGGAGGTAAAGGTAAAACAACAAAATTCAAGGCACCAGTATCAAGGCAGAGGCAGAGGCAGAGCAGCACTCTCAACGAAGGCAGCAACGGACATGGTGAAGGCGATCAGAGTTCACGAACTCGGTGGAGCTGAGGTTCTCAAGTGGGAGGATGTGGAAATTGGTGAACCAAAAGAAGGCGAGGTTCGGGTGAGGAACAAAGCCATTGGAGTTAATTTCATCGATGTCTACTTTCGCAAAGGAGTTTACAAAGCCCCCTCTTTACCCTTCACTCCAGGTATGGAAGCTGTTGGGGTTGTGACCGCTGTGGGTGCTGGACTCACTGGTAGGCAGGTTGGAGATCTTGTAGCTTATGCAGGTCAACCAATGGGCTCATATGCTGAAGAACAAATACTTCCTGCAAATAAAGTAGTCCCTGTCCCTTCGTCCATTGACCCAACTATTGCAGCATCCATCATGTTGAAAGGCATGACAACTCAGTTTTTGCTTCGGCGCTGTTTCAAGGTTGAACCTGGTCACACAATTCTTGTTCATGCTGCAGCTGGTGGTGTTGGATCCCTATTGTGCCAGTGGGCAAATGCTCTTGGCGCAACTGTAATAGGAACTGTATCCACTAAAGAGAAGGCGGCTCAAGCCAAGGAGGATGGCTGCCATCATGTTATATTTTATAAAGAAGAGGATTTTGTTGCCCGCGTCAATGAGATTACGTCAGGCAATGGAGTGGAAGTAGTCTATGATTCTGTAGGAAAGGATACCTTTGAGGGATCTTTGGCTTGCTTGAAGCTTAGGGGCTACATGGTAAGTTTTGGGCAGTCATCGGGTGCACCTGATCCAGTCCCATTATCTTCCCTGGCAGCAAAATCTCTGTTCTTGACAAGGCCCACCCTAATGCAATATGTTGTCACTCGGGATGAGCTATTGGAAGCTGCTGGAGAGGTGTTTGCAAATGTTGCTTCTGGTGTCTTGAAGGTTCGTGTTAATCATACTTACCCATTATCTGATGCAGCAAAAGCACACGAAGACTTGGAGAATCGGAAGACATCAGGATCTGTTGTGTTGATACCCAATGCTCTCAGTTCTGTGTAG 3318 0.469 MEPEPEAWPEFNSKDEAFSYYQAHAKSVGFSAIIKASRRSRISGNFIDAKFACTRYGIAPTPSNPHKPKRARTNPPGPKTDCKACMHVKRTHHGTWIISSFIKHHNHQTSPHHNNNTDNNASPSRKPKTKRTLHHLGDLQFLLNTLMCMQDENPNFFYAVDFDEEQRLRTVFWVDAKARLDYSHFNDVILLDTTHVKNDYKLPFVPFVGVNHHSQFLLLGLAFVCHESESTFVWLIRTWLRAMGGCAPKVMLTDRDQALKKAVSQVIPDACHCFCLWHVLSKVPEKLGRVVIRHGEFMSRFNKCVLRSRTKEQFEKRWGKMVERFELGGESWLWDIYEDREQWMPVFMKGRSLAGMSTVQRSEAMNCLFDKYVQRRTTLKEFLEQYRVVLRVKCEEEAKADFETLHRQPVLKSPSPFGKQMVGFYTHAVFKKFQSQVLGAVACHPRKESEEGPVKMFSVQDFEENQDFVVMWNELTLEASCSCFSFEFNGFLCRHVMIVLQISGVHGIPPRYILKRWTKDAKRRQIARDVSDVVVSDSKDKRYNNLCQRAFALGHEGSFSQESYIAAVNALEEALRKCESLNDSIQSVGEPNLPCFGSQEVNLSNNAGHTNKKDSTLRESQVCPEPEIIAMGVDSSWQQVGNPTTRSAGFDCSFESQQSIRELGQLNSRAQNLNGYFATQRIESGMYQLNSIATICRDNYSNQHGIQGLGQLNSITPIHDPHYMAPQRMNGMGQPDGGSSQLHELEVKVKQQNSRHQYQGRGRGRAALSTKAATDMVKAIRVHELGGAEVLKWEDVEIGEPKEGEVRVRNKAIGVNFIDVYFRKGVYKAPSLPFTPGMEAVGVVTAVGAGLTGRQVGDLVAYAGQPMGSYAEEQILPANKVVPVPSSIDPTIAASIMLKGMTTQFLLRRCFKVEPGHTILVHAAAGGVGSLLCQWANALGATVIGTVSTKEKAAQAKEDGCHHVIFYKEEDFVARVNEITSGNGVEVVYDSVGKDTFEGSLACLKLRGYMVSFGQSSGAPDPVPLSSLAAKSLFLTRPTLMQYVVTRDELLEAAGEVFANVASGVLKVRVNHTYPLSDAAKAHEDLENRKTSGSVVLIPNALSSV 1105
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cca04g01956 1105 Pfam Zinc-binding dehydrogenase 927 1035 IPR013149 -
Cca04g01956 1105 PANTHER PROTEIN FAR-RED ELONGATED HYPOCOTYL 3 130 654 - -
Cca04g01956 1105 Pfam Alcohol dehydrogenase GroES-like domain 804 862 IPR013154 -
Cca04g01956 1105 SUPERFAMILY GroES-like 776 925 IPR011032 -
Cca04g01956 1105 Pfam MULE transposase domain 188 281 IPR018289 -
Cca04g01956 1105 ProSiteProfiles Zinc finger SWIM-type profile. 468 504 IPR007527 GO:0008270
Cca04g01956 1105 Pfam SWIM zinc finger 469 500 IPR007527 GO:0008270
Cca04g01956 1105 MobiDBLite consensus disorder prediction 106 129 - -
Cca04g01956 1105 PANTHER PROTEIN FAR1-RELATED SEQUENCE 10-RELATED 130 654 IPR031052 GO:0006355
Cca04g01956 1105 PANTHER PROTEIN FAR1-RELATED SEQUENCE 10-RELATED 4 118 IPR031052 GO:0006355
Cca04g01956 1105 PANTHER PROTEIN FAR-RED ELONGATED HYPOCOTYL 3 4 118 - -
Cca04g01956 1105 Gene3D - 899 1043 - -
Cca04g01956 1105 CDD QOR2 778 1099 - -
Cca04g01956 1105 SMART PKS_ER_names_mod 786 1097 IPR020843 GO:0016491
Cca04g01956 1105 Gene3D - 786 1093 - -
Cca04g01956 1105 Pfam FAR1 DNA-binding domain 19 109 IPR004330 -
Cca04g01956 1105 SUPERFAMILY NAD(P)-binding Rossmann-fold domains 888 1050 IPR036291 -
Cca04g01956 1105 SMART 26again6 479 506 IPR006564 GO:0008270
Cca04g01956 1105 MobiDBLite consensus disorder prediction 59 81 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Cca04g01956 Cca-Chr4 37999812 38013484 Tandem
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF FAR1 Cca04g01956 ADH_zinc_N 6e-25 CL0063