Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cca04g01927 ATGAGTATTGTTTATAGTCATGCTGTGAAGTATTCCCAAGGAGAGACAAGGATGAACCCTGAAATGGATCCAAATATTGGTCAACATTGTCACCAACACAATTCTGGCCTAACGCGGTACCGTTCTGCCCCAAGCTCATTGCTCACAAGCCTTGTGaacaacaacaacaacaacaTTGGTTGTGTGAATGGTGAAGCTTTCAGAAGTGACCATAATGATCATCAGCAGCAGCAGCAGAATTATCCTCCCACCACAAGTTCAGAAATGGAGACCATGTTGGCCAAGTTGATTTCTTCAACCAATTCTGAGCCTTTGCAAGTGAAGCAAGAAGCAGGGGACTCTGTTTCACAGCCACCACCACAAAACAGTGGTTACTCCTATGGGCCTTCACCTCAGATAATGTACCAAACTCAGCAAATTCAAGGCTTGCCAATGCCAAATGGCTCTCTGGGTGCTTCAGGGAATGCTTTTGATGGCTCATTCAGTGCAGTGAGTTCCCTGCCCTCACAGAATTCTACACAAACTAAAATGAGTGCCTCCAACCATTGTTCCAATCTCATTAGGCAAAAGAGTTCCCCTGCTGGGTTCTTCTCCAATTACTCAGTTGATAATGCTTTGAGAGATGTAGCAAGTTTTAGGGGCTGTGATGTCTCAAACGGACAAGCTATTACAACCACCAGTGGACTGCATGGTACTTTGAACTTCTCATCTAGGGCATCCTCTTGCTCCACCCGGATGCCACAGATTGCTGAAAATGGAAATGAAGGTGTGGAAACAAATTGTGTTGAAAGTAGAAACCTGAGAAATGACAATGGCAACTCCAAATGTTACATGCCTTCTTTCACCAGTGACTTCTGGGATGCTTCTGCATTCAGTGCCTCCAAAGCTAGCAACAATGCTGAAATCTCGTTTTCCACTTCAAATGCTATGGATATTCAGGATGCTGATTTTGGATATCAAAATGTTGGTTTGACCCACCATTTGAGTCTGCCTAGCTCTTCTACTAAGATGGCTACCATGCAGAAATTTTATCAGATTCAAGGATCTGTTCCATGTAAAATTCGTGCCAAGAGAGGCTTTGCTACACACCCAAGAAGCATTGCAGAGAGGGAAAGAAGAACACGAATTAGTGCAAGAATCAAGAAATTGCAAGACCTTTTCCCAAAATCGGACAAGCAAACAAGCACAGCAGATATGTTGGATTTGGCAGTTGATTACATTAAAGACCTACAGAAACAAGTTAAGATGCTCACAGATACTAGGGCAAAGTGCACTTGTACAAGTAACCAGAAGCAATATTCTAGACCTTGTGCCTGA 1317 0.4282 MSIVYSHAVKYSQGETRMNPEMDPNIGQHCHQHNSGLTRYRSAPSSLLTSLVNNNNNNIGCVNGEAFRSDHNDHQQQQQNYPPTTSSEMETMLAKLISSTNSEPLQVKQEAGDSVSQPPPQNSGYSYGPSPQIMYQTQQIQGLPMPNGSLGASGNAFDGSFSAVSSLPSQNSTQTKMSASNHCSNLIRQKSSPAGFFSNYSVDNALRDVASFRGCDVSNGQAITTTSGLHGTLNFSSRASSCSTRMPQIAENGNEGVETNCVESRNLRNDNGNSKCYMPSFTSDFWDASAFSASKASNNAEISFSTSNAMDIQDADFGYQNVGLTHHLSLPSSSTKMATMQKFYQIQGSVPCKIRAKRGFATHPRSIAERERRTRISARIKKLQDLFPKSDKQTSTADMLDLAVDYIKDLQKQVKMLTDTRAKCTCTSNQKQYSRPCA 438
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cca04g01927 438 SMART finulus 366 416 IPR011598 GO:0046983
Cca04g01927 438 Gene3D - 362 433 IPR036638 GO:0046983
Cca04g01927 438 ProSiteProfiles Myc-type, basic helix-loop-helix (bHLH) domain profile. 360 410 IPR011598 GO:0046983
Cca04g01927 438 PANTHER TRANSCRIPTION FACTOR BHLH83-RELATED 26 430 - -
Cca04g01927 438 MobiDBLite consensus disorder prediction 104 128 - -
Cca04g01927 438 Pfam Helix-loop-helix DNA-binding domain 366 411 IPR011598 GO:0046983
Cca04g01927 438 PANTHER TRANSCRIPTION FACTOR BHLH FAMILY-RELATED 26 430 - -
Cca04g01927 438 SUPERFAMILY HLH, helix-loop-helix DNA-binding domain 363 423 IPR036638 GO:0046983
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Cca04g01927 Cca-Chr4 37532350 37537541 Wgd
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF bHLH Cca04g01927 HLH 2.3e-10 No_clan
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Cca10g01623 10 27944931 27948270 Cca04g01927 04 37532350 37537541 ECH
Cca04g01927 04 37532350 37537541 Cca04g01927 04 37532350 37537541 ECH